Rmu_sc0008148.1_g000014

GTP-binding Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008148.1
OG0001046
Physical Location & Seq
Forward (+)
25121 .. 30532
5412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008148.1_g000014.1.cds

Sequence Viewer

Length: 1020 bp
atgaccgaaagaccgaaagaccagaagaaaccgatccggaccggccggttcgggtcgggttttagagggaaaataagtgatttcgggccggtcggtccctatactcaatgtgccggttcggtcccggttcttaacttgcgtgactgcttggccggttcggtccctgtactcaatgtgccggtccggtcccggttcatgacttgcggtgactgcgtggaccgaaaaaaccgagcttgtatacatgtctttcattggttagttttgaagtccattgtgttagtatggacatcacatgattactctctgggtcttccactcttcctcacctctgcggctctgcctcacaatcggtctgcgtctctgcctcccaggtacaccaaggtggtcttgattggcgactctggcgtcggcaagtccaatctcctctccaggttcgacaagaacgagttcaaccgcgagtccaagtccaccattgctgtcgagttcgctggccaaatcggtcatcaaggcccagatttgggacactgctggccacgaaagggaggactggaggagcagctgcatggcattgagcatggcagcaaggaactggtggaagtttgccttgctgctagtgcagattgcactttgcagaatggtttattggtcaagcagcaaaatgcagcagtgctgcaaagattgactggaaccagaaacccgaaaaacgggctggttttgtcacggtccgggccggtccccattctctgcatctacaagtccggtcagggtttagcattgctggttccggtcccggtccctgtaaaagcagtgccgggccccgcctccgtccaccaccagcctagggctggtgcagtccctatccataacgccatggatagtgtccatcatggtgatggcgccccaggtgatgctgcaatcaccaacttgcttcaaatagcgtttcagacgctcatgcctgaccaaaatactcattggttgcttctaaagcctctcgctcgtttttcaaagcccgttccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000212 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000922 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005768 GO:0005794 GO:0005802 GO:0005819 GO:0005856 GO:0005933 GO:0005935 GO:0005938 GO:0006810 GO:0006886 GO:0006887 GO:0006996 GO:0007010 GO:0007017 GO:0007033 GO:0007049 GO:0007051 GO:0007107 GO:0007154 GO:0007165 GO:0007264 GO:0008104 GO:0008150 GO:0009987 GO:0010564 GO:0010720 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019867 GO:0022402 GO:0022414 GO:0022603 GO:0023052 GO:0030427 GO:0031023 GO:0031090 GO:0031410 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0031982 GO:0031984 GO:0032506 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0032940 GO:0033036 GO:0033365 GO:0034306 GO:0034307 GO:0034498 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0042144 GO:0042147 GO:0042173 GO:0042763 GO:0042764 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043937 GO:0043938 GO:0043940 GO:0043941 GO:0044087 GO:0044089 GO:0044380 GO:0044422 GO:0044424 GO:0044429 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0045595 GO:0045597 GO:0045787 GO:0045881 GO:0045921 GO:0046903 GO:0046907 GO:0048193 GO:0048284 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051300 GO:0051301 GO:0051321 GO:0051445 GO:0051446 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0055037 GO:0060284 GO:0060627 GO:0061024 GO:0061025 GO:0061640 GO:0061796 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0071988 GO:0072687 GO:0072697 GO:0072698 GO:0075296 GO:0090068 GO:0090619 GO:0090726 GO:0097159 GO:0097367 GO:0097576 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099568 GO:1901265 GO:1901363 GO:1902410 GO:1902441 GO:1903023 GO:1903024 GO:1903046 GO:1903047 GO:1903530 GO:1903532 GO:1905508 GO:1990151 GO:1990395 GO:1990778 GO:1990896 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

339

Amino Acids

36.56

Weight (kDa)

9.56

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 896
AccI GTMKAC 1 cut(s) 238
AccII CGCG 1 cut(s) 456
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 4 cut(s) 204, 332, 454, 819
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 4 cut(s) 43, 150, 490, 530
AcyI GRCGYC 2 cut(s) 405, 897
AfaI GTAC 2 cut(s) 168, 374
AfiI CCNNNNNNNGG 6 cut(s) 517, 518, 539, 704, 841, 845
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 265, 451, 932, 1005
AjnI CCWGG 3 cut(s) 368, 428, 901
AjuI GAANNNNNNNTTGG 2 cut(s) 626, 658
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 2 cut(s) 233, 559
AluI AGCT 2 cut(s) 233, 559
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 8 cut(s) 43, 86, 150, 490, 508, 530, 728, 814
ApaI GGGCCC 1 cut(s) 818
ApeKI GCWGC 8 cut(s) 556, 559, 579, 608, 652, 662, 670, 911
Asp700I GAANNNNTTC 1 cut(s) 446
AspA2I CCTAGG 1 cut(s) 839
AspLEI GCGC 1 cut(s) 899
AsuC2I CCSGG 5 cut(s) 125, 190, 727, 791, 813
AsuHPI GGTGA 5 cut(s) 218, 316, 902, 910, 917
AvrII CCTAGG 1 cut(s) 839
BaeGI GKGCMC 1 cut(s) 818
BalI TGGCCA 2 cut(s) 492, 532
BanI GGYRCC 1 cut(s) 896
BanII GRGCYC 1 cut(s) 818
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 8 cut(s) 546, 568, 591, 595, 657, 664, 674, 898
BccI CCATC 2 cut(s) 887, 891
BciT130I CCWGG 3 cut(s) 370, 430, 903
BcnI CCSGG 5 cut(s) 125, 190, 727, 791, 813
BcoDI GTCTC 1 cut(s) 363
BfaI CTAG 2 cut(s) 612, 840
BfoI RGCGCY 1 cut(s) 900
BisI GCNGC 9 cut(s) 333, 557, 560, 580, 609, 653, 663, 671, 912
BlnI CCTAGG 1 cut(s) 839
BlsI GCNGC 9 cut(s) 334, 558, 561, 581, 610, 654, 664, 672, 913
Bme1390I CCNGG 8 cut(s) 125, 190, 370, 430, 727, 791, 813, 903
BmrFI CCNGG 8 cut(s) 125, 190, 370, 430, 727, 791, 813, 903
BmsI GCATC 2 cut(s) 756, 898
BpiI GAAGAC 1 cut(s) 302
BpmI CTGGAG 2 cut(s) 412, 569
BpuMI CCSGG 5 cut(s) 125, 190, 727, 791, 813
BsaHI GRCGYC 2 cut(s) 405, 897
BsaJI CCNNGG 5 cut(s) 368, 378, 839, 870, 901
BsaWI WCCGGW 4 cut(s) 36, 183, 758, 784
Bsc4I CCNNNNNNNGG 6 cut(s) 517, 518, 539, 704, 841, 845
Bse118I RCCGGY 7 cut(s) 41, 45, 88, 113, 152, 178, 730
Bse1I ACTGG 3 cut(s) 552, 594, 688
Bse3DI GCAATG 2 cut(s) 471, 773
BseAI TCCGGA 1 cut(s) 36
BseBI CCWGG 3 cut(s) 370, 430, 903
BseDI CCNNGG 5 cut(s) 368, 378, 839, 870, 901
BseLI CCNNNNNNNGG 6 cut(s) 517, 518, 539, 704, 841, 845
BseMI GCAATG 2 cut(s) 471, 773
BseNI ACTGG 3 cut(s) 552, 594, 688
BseRI GAGGAG 2 cut(s) 413, 566
BseSI GKGCMC 1 cut(s) 818
BseX3I CGGCCG 1 cut(s) 43
BseXI GCAGC 8 cut(s) 546, 568, 591, 595, 657, 664, 674, 898
BsgI GTGCAG 2 cut(s) 636, 870
Bsh1236I CGCG 1 cut(s) 456
Bsh1285I CGRYCG 2 cut(s) 46, 93
BshFI GGCC 8 cut(s) 45, 88, 152, 492, 510, 532, 730, 816
BshNI GGYRCC 1 cut(s) 896
BsiEI CGRYCG 2 cut(s) 46, 93
BslFI GGGAC 9 cut(s) 81, 107, 146, 172, 534, 719, 773, 779, 839
BslI CCNNNNNNNGG 6 cut(s) 517, 518, 539, 704, 841, 845
BsmAI GTCTC 1 cut(s) 363
BsmBI CGTCTC 1 cut(s) 363
BsmFI GGGAC 9 cut(s) 81, 107, 146, 172, 534, 719, 773, 779, 839
BsnI GGCC 8 cut(s) 45, 88, 152, 492, 510, 532, 730, 816
Bsp120I GGGCCC 1 cut(s) 814
Bsp1286I GDGCHC 1 cut(s) 818
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 1 cut(s) 33
Bsp19I CCATGG 1 cut(s) 870
BspACI CCGC 4 cut(s) 204, 332, 454, 819
BspANI GGCC 8 cut(s) 45, 88, 152, 492, 510, 532, 730, 816
BspEI TCCGGA 1 cut(s) 36
BspFNI CGCG 1 cut(s) 456
BspHI TCATGA 1 cut(s) 195
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 896
BsrDI GCAATG 2 cut(s) 471, 773
BsrFI RCCGGY 7 cut(s) 41, 45, 88, 113, 152, 178, 730
BsrI ACTGG 3 cut(s) 552, 594, 688
BssAI RCCGGY 7 cut(s) 41, 45, 88, 113, 152, 178, 730
BssECI CCNNGG 5 cut(s) 368, 378, 839, 870, 901
BssMI GATC 1 cut(s) 33
BssNAI GTATAC 1 cut(s) 239
BssNI GRCGYC 2 cut(s) 405, 897
BssT1I CCWWGG 3 cut(s) 378, 839, 870
Bst1107I GTATAC 1 cut(s) 239
Bst2UI CCWGG 3 cut(s) 370, 430, 903
Bst4CI ACNGT 1 cut(s) 723
Bst6I CTCTTC 1 cut(s) 323
BstACI GRCGYC 2 cut(s) 405, 897
BstC8I GCNNGC 2 cut(s) 490, 530
BstDEI CTNAG 1 cut(s) 1017
BstDSI CCRYGG 1 cut(s) 870
BstFNI CGCG 1 cut(s) 456
BstH2I RGCGCY 1 cut(s) 900
BstHHI GCGC 1 cut(s) 899
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 1 cut(s) 33
BstMCI CGRYCG 2 cut(s) 46, 93
BstMWI GCNNNNNNNGC 4 cut(s) 210, 402, 614, 985
BstNI CCWGG 3 cut(s) 370, 430, 903
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 8 cut(s) 123, 188, 368, 428, 725, 789, 811, 901
BstSLI GKGCMC 1 cut(s) 818
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 8 cut(s) 546, 568, 591, 595, 657, 664, 674, 898
BstV2I GAAGAC 1 cut(s) 302
BstZ17I GTATAC 1 cut(s) 239
BstZI CGGCCG 1 cut(s) 43
BsuRI GGCC 8 cut(s) 45, 88, 152, 492, 510, 532, 730, 816
BtgI CCRYGG 1 cut(s) 870
BtsI GCAGTG 3 cut(s) 523, 672, 813
BtsIMutI CAGTG 3 cut(s) 523, 672, 813
Cac8I GCNNGC 2 cut(s) 490, 530
CciI TCATGA 1 cut(s) 195
CfoI GCGC 1 cut(s) 899
Cfr10I RCCGGY 7 cut(s) 41, 45, 88, 113, 152, 178, 730
CpoI CGGWCCG 3 cut(s) 39, 181, 723
CseI GACGC 3 cut(s) 345, 394, 955
Csp6I GTAC 2 cut(s) 167, 373
CspI CGGWCCG 3 cut(s) 39, 181, 723
CviAII CATG 8 cut(s) 196, 242, 293, 563, 575, 871, 887, 952
CviQI GTAC 2 cut(s) 167, 373
DdeI CTNAG 1 cut(s) 1017
DinI GGCGCC 1 cut(s) 898
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
EaeI YGGCCR 4 cut(s) 43, 150, 490, 530
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
EclXI CGGCCG 1 cut(s) 43
Eco130I CCWWGG 3 cut(s) 378, 839, 870
Eco24I GRGCYC 1 cut(s) 818
Eco52I CGGCCG 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 815
EcoRII CCWGG 3 cut(s) 368, 428, 901
EcoT14I CCWWGG 3 cut(s) 378, 839, 870
EcoT38I GRGCYC 1 cut(s) 818
EgeI GGCGCC 1 cut(s) 898
EheI GGCGCC 1 cut(s) 898
ErhI CCWWGG 3 cut(s) 378, 839, 870
Esp3I CGTCTC 1 cut(s) 363
FaeI CATG 8 cut(s) 199, 245, 296, 566, 578, 874, 890, 955
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 588, 620
FaqI GGGAC 9 cut(s) 81, 107, 146, 172, 534, 719, 773, 779, 839
FatI CATG 8 cut(s) 195, 241, 292, 562, 574, 870, 886, 951
FauI CCCGC 1 cut(s) 826
FblI GTMKAC 1 cut(s) 238
Fnu4HI GCNGC 9 cut(s) 333, 557, 560, 580, 609, 653, 663, 671, 912
FriOI GRGCYC 1 cut(s) 818
Fsp4HI GCNGC 9 cut(s) 333, 557, 560, 580, 609, 653, 663, 671, 912
FspBI CTAG 2 cut(s) 612, 840
GlaI GCGC 1 cut(s) 898
GluI GCNGC 9 cut(s) 333, 557, 560, 580, 609, 653, 663, 671, 912
GsuI CTGGAG 2 cut(s) 412, 569
HaeII RGCGCY 1 cut(s) 900
HaeIII GGCC 8 cut(s) 45, 88, 152, 492, 510, 532, 730, 816
HgaI GACGC 3 cut(s) 345, 394, 955
HhaI GCGC 1 cut(s) 899
Hin1I GRCGYC 2 cut(s) 405, 897
Hin1II CATG 8 cut(s) 199, 245, 296, 566, 578, 874, 890, 955
Hin6I GCGC 1 cut(s) 897
HinP1I GCGC 1 cut(s) 897
HinfI GANTC 2 cut(s) 398, 458
HphI GGTGA 5 cut(s) 218, 316, 902, 910, 917
Hpy166II GTNNAC 5 cut(s) 217, 239, 375, 468, 829
Hpy188I TCNGA 1 cut(s) 945
Hpy188III TCNNGA 3 cut(s) 37, 196, 388
Hpy8I GTNNAC 5 cut(s) 217, 239, 375, 468, 829
Hpy99I CGWCG 1 cut(s) 410
HpyCH4III ACNGT 1 cut(s) 723
HpyCH4V TGCA 9 cut(s) 562, 617, 624, 631, 662, 673, 747, 851, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 402, 614, 985
HpyF3I CTNAG 1 cut(s) 1017
Hsp92I GRCGYC 2 cut(s) 405, 897
Hsp92II CATG 8 cut(s) 199, 245, 296, 566, 578, 874, 890, 955
HspAI GCGC 1 cut(s) 897
KasI GGCGCC 1 cut(s) 896
Kpn2I TCCGGA 1 cut(s) 36
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 8 cut(s) 546, 568, 591, 595, 657, 664, 674, 898
LweI GCATC 2 cut(s) 756, 898
MaeI CTAG 2 cut(s) 612, 840
MaeIII GTNAC 3 cut(s) 140, 206, 717
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 3 cut(s) 37, 302, 310
MhlI GDGCHC 1 cut(s) 818
MlsI TGGCCA 2 cut(s) 492, 532
MluNI TGGCCA 2 cut(s) 492, 532
Mly113I GGCGCC 1 cut(s) 897
MlyI GAGTC 2 cut(s) 392, 467
Mox20I TGGCCA 2 cut(s) 492, 532
MroI TCCGGA 1 cut(s) 36
MroXI GAANNNNTTC 1 cut(s) 446
MscI TGGCCA 2 cut(s) 492, 532
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 3 cut(s) 380, 888, 891
Msp20I TGGCCA 2 cut(s) 492, 532
MspA1I CMGCKG 1 cut(s) 559
MspR9I CCNGG 8 cut(s) 125, 190, 370, 430, 727, 791, 813, 903
MvaI CCWGG 3 cut(s) 370, 430, 903
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 4 cut(s) 210, 402, 614, 985
NarI GGCGCC 1 cut(s) 897
NciI CCSGG 5 cut(s) 125, 190, 727, 791, 813
NcoI CCATGG 1 cut(s) 870
NdeII GATC 1 cut(s) 33
NlaIII CATG 8 cut(s) 199, 245, 296, 566, 578, 874, 890, 955
NmuCI GTSAC 3 cut(s) 140, 206, 717
NspI RCATGY 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 380
PagI TCATGA 1 cut(s) 195
PciI ACATGT 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 446
PkrI GCNGC 9 cut(s) 334, 558, 561, 581, 610, 654, 664, 672, 913
PleI GAGTC 2 cut(s) 392, 466
PluTI GGCGCC 1 cut(s) 900
PpsI GAGTC 2 cut(s) 392, 466
PscI ACATGT 1 cut(s) 241
Psp6I CCWGG 3 cut(s) 368, 428, 901
PspGI CCWGG 3 cut(s) 368, 428, 901
PspOMI GGGCCC 1 cut(s) 814
PvuII CAGCTG 1 cut(s) 559
RsaI GTAC 2 cut(s) 168, 374
RsaNI GTAC 2 cut(s) 167, 373
RseI CAYNNNNRTG 3 cut(s) 380, 888, 891
Rsr2I CGGWCCG 3 cut(s) 39, 181, 723
RsrII CGGWCCG 3 cut(s) 39, 181, 723
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 9 cut(s) 333, 557, 560, 580, 609, 653, 663, 671, 912
Sau3AI GATC 1 cut(s) 33
SchI GAGTC 2 cut(s) 392, 467
ScrFI CCNGG 8 cut(s) 125, 190, 370, 430, 727, 791, 813, 903
SduI GDGCHC 1 cut(s) 818
SetI ASST 7 cut(s) 235, 329, 374, 384, 434, 561, 907
SfaNI GCATC 2 cut(s) 756, 898
SfoI GGCGCC 1 cut(s) 898
SmiMI CAYNNNNRTG 3 cut(s) 380, 888, 891
SsiI CCGC 4 cut(s) 204, 332, 454, 819
SspDI GGCGCC 1 cut(s) 896
SspMI CTAG 2 cut(s) 612, 840
StyD4I CCNGG 8 cut(s) 123, 188, 368, 428, 725, 789, 811, 901
StyI CCWWGG 3 cut(s) 378, 839, 870
TaaI ACNGT 1 cut(s) 723
TaqI TCGA 2 cut(s) 435, 480
TaqII GACCGA 8 cut(s) 20, 28, 83, 109, 148, 234, 339, 488
TatI WGTACW 1 cut(s) 166
TauI GCSGC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 3 cut(s) 530, 672, 813
TseFI GTSAC 3 cut(s) 140, 206, 717
TseI GCWGC 8 cut(s) 556, 559, 579, 608, 652, 662, 670, 911
Tsp45I GTSAC 3 cut(s) 140, 206, 717
TspDTI ATGAA 2 cut(s) 184, 239
TspGWI ACGGA 1 cut(s) 814
TspRI CASTG 3 cut(s) 530, 672, 813
XceI RCATGY 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 2 cut(s) 842, 890
XmaJI CCTAGG 1 cut(s) 839
XmiI GTMKAC 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 2 cut(s) 612, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.