pycom17g00180

Protein of unknown function (DUF3754)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
133991 .. 135020
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 507 bp
ATGGATTGGCTCACGTTCGTTGGCTCTGCTGTAGTAGGGCTGGTCAGTTTCTTGATAGCAGCAATAAAGTTTGTGTTGGTGCACTGTAATCTTGTCATTTTTTTTAATCTTGTGAAAATACAGCTTAATCCTAATCACCATGTGTTGGTTTACTGCAGTTATCAGCAGAACTTGGCTCAGTATCAGAACTTGATAACACAGTCCATGTACGAAAAACAATTGGATAGCGGACGGGGTACTCTCCTTCACTTGTGCGATGATGTGATCCAACAGGAAGTGAAGGAGGTGATAATTGCTTTTTACATATTAATGGAACAAGGGAAAGCTACCGCACTAGATCTGGATAAGTGGTGTGAGGAACTGATCAAAGAACAGTTTAACGACGACTGTAATTTTGATGTGGACGATGCAGTTCAGAAGTTGGAGAAATTGGGAATTGTAACTCGGGTAAGGGCTGAAACGTGCGAACGAGATCATTGGCACCACCACAGAGGAGGTTGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

169

Amino Acids

19.36

Weight (kDa)

5.38

Isoelectric Point (pI)

20.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 480
AccB7I CCANNNNNTGG 1 cut(s) 145
AciI CCGC 2 cut(s) 228, 330
AclWI GGATC 1 cut(s) 259
AdeI CACNNNGTG 1 cut(s) 142
AfaI GTAC 2 cut(s) 209, 238
AfiI CCNNNNNNNGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 124, 326
AluI AGCT 2 cut(s) 124, 326
Alw21I GWGCWC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 80
AlwI GGATC 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 444
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 59
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AseI ATTAAT 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 128, 298
AvaI CYCGRG 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 71
BclI TGATCA 1 cut(s) 363
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 2 cut(s) 30, 154
BglII AGATCT 1 cut(s) 337
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 444
BmiI GGNNCC 1 cut(s) 482
BmsI GCATC 1 cut(s) 397
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 507
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 444
BslI CCNNNNNNNGG 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 4 cut(s) 264, 337, 363, 472
BspACI CCGC 2 cut(s) 228, 330
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 482
BspMAI CTGCAG 1 cut(s) 158
BspPI GGATC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 480
BssMI GATC 4 cut(s) 264, 337, 363, 472
Bst4CI ACNGT 4 cut(s) 86, 201, 375, 389
BstDEI CTNAG 1 cut(s) 177
BstKTI GATC 4 cut(s) 267, 340, 366, 475
BstMBI GATC 4 cut(s) 264, 337, 363, 472
BstSFI CTRYAG 2 cut(s) 30, 154
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BtgZI GCGATG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 82
Csp6I GTAC 2 cut(s) 208, 237
CviAII CATG 2 cut(s) 140, 205
CviJI RGCY 7 cut(s) 10, 24, 40, 124, 176, 326, 455
CviKI_1 RGCY 7 cut(s) 10, 24, 40, 124, 176, 326, 455
CviQI GTAC 2 cut(s) 208, 237
DdeI CTNAG 1 cut(s) 177
DpnI GATC 4 cut(s) 266, 339, 365, 474
DpnII GATC 4 cut(s) 264, 337, 363, 472
DraIII CACNNNGTG 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 444
FaeI CATG 2 cut(s) 143, 208
FaiI YATR 3 cut(s) 141, 206, 305
FatI CATG 2 cut(s) 139, 204
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 335
GluI GCNGC 1 cut(s) 60
Hin1II CATG 2 cut(s) 143, 208
HphI GGTGA 2 cut(s) 128, 298
Hpy166II GTNNAC 3 cut(s) 82, 151, 403
Hpy188I TCNGA 2 cut(s) 186, 417
Hpy188III TCNNGA 2 cut(s) 52, 341
Hpy8I GTNNAC 3 cut(s) 82, 151, 403
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 254, 274
HpyCH4III ACNGT 4 cut(s) 86, 201, 375, 389
HpyCH4IV ACGT 2 cut(s) 14, 461
HpyCH4V TGCA 3 cut(s) 82, 156, 410
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 2 cut(s) 14, 461
Hsp92II CATG 2 cut(s) 143, 208
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 4 cut(s) 264, 337, 363, 472
LpnPI CCDG 3 cut(s) 26, 257, 326
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 397
MaeI CTAG 1 cut(s) 335
MaeII ACGT 2 cut(s) 14, 461
MaeIII GTNAC 1 cut(s) 439
MalI GATC 4 cut(s) 266, 339, 365, 474
MboI GATC 4 cut(s) 264, 337, 363, 472
MfeI CAATTG 1 cut(s) 218
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 5 cut(s) 218, 291, 391, 428, 435
MmeI TCCRAC 2 cut(s) 292, 402
MnlI CCTC 4 cut(s) 277, 349, 485, 488
MseI TTAA 5 cut(s) 105, 126, 308, 378, 505
MslI CAYNNNNRTG 1 cut(s) 308
MunI CAATTG 1 cut(s) 218
NdeII GATC 4 cut(s) 264, 337, 363, 472
NlaIII CATG 2 cut(s) 143, 208
NlaIV GGNNCC 1 cut(s) 482
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 482
PstI CTGCAG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 2 cut(s) 209, 238
RsaNI GTAC 2 cut(s) 208, 237
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 5 cut(s) 105, 126, 308, 378, 505
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 4 cut(s) 264, 337, 363, 472
SduI GDGCHC 1 cut(s) 84
SetI ASST 6 cut(s) 17, 126, 288, 328, 464, 499
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 2 cut(s) 30, 154
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 5 cut(s) 218, 291, 391, 428, 435
SsiI CCGC 2 cut(s) 228, 330
SspMI CTAG 1 cut(s) 335
TaaI ACNGT 4 cut(s) 86, 201, 375, 389
TaiI ACGT 2 cut(s) 17, 464
TasI AATT 5 cut(s) 218, 291, 391, 428, 435
Tru1I TTAA 5 cut(s) 105, 126, 308, 378, 505
Tru9I TTAA 5 cut(s) 105, 126, 308, 378, 505
TscAI CASTG 1 cut(s) 89
TseI GCWGC 1 cut(s) 59
TspRI CASTG 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 145
VneI GTGCAC 1 cut(s) 80
VspI ATTAAT 1 cut(s) 308
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.