pycom17g24220

O-acyltransferase (WSD1-like)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
22518640 .. 22519249
610 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 552 bp
ATGAATCATATGACGAGTATTTTGGATGACTATATCTCAAACATAGCTACAAAAGGATTTCCACATGACCAGCCACTGTGGGAAATTCATATTATAAAGTACCCAAATAGCAATGCAGCTGATAATGTAATATTCAAGTTGCACCATGCATTAGGTGATGGCTACTCCCTCGTGGGCTTTATTCTCTCCTGTCTACAAAGGAGCGAAAATGTTATGACCAAAACTATCTCATCCTTGTTGAACACCGTATCCGATTTTTGGTGGGGCATTTCAAAGAGCGTCATGAGGGTAGATGATCGATCACCAATAAAATCCTCAAACAATGGACTTGAATTCGCACCAATTACAGTATCAACTATGGCGACCGCTCTTGATCGAATCAGATTAATTAAGAGCAAGCTCAGAGTGATAAGTATCAGGTTTTCTCTGCAATATTTTGGTTTATGTATGTGTGTATGTATTTTTTTCTTTATAAAATACAAGAATAAGCTTTCATGTTTGACTTTCCTTCTCCTGTTTAAAACAAAAGTATATATTGTCGCTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

184

Amino Acids

20.88

Weight (kDa)

9.36

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10290 FvH4_3g28230 FvH4_3g28240
malus_domestica MD05G1036400.v1.1 MD10G1159400.v1.1 MD17G1237100.v1.1 MD17G1237200.v1.1 MD17G1237300.v1.1 MD17G1237600.v1.1 MD17G1238200.v1.1
prunus_persica Prupe.3G140400_v2.0.a1 Prupe.3G140700_v2.0.a1 Prupe.3G141100_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G257800_v2.0.a1 Prupe.4G258100_v2.0.a1 Prupe.7G117300_v2.0.a1 Prupe.7G117400_v2.0.a1 Prupe.7G117600_v2.0.a1 Prupe.8G044700_v2.0.a1
pyrus_communis pycom05g02680 pycom17g24220 pycom17g24240
rosa_chinensis RchiOBHm_Chr1g0350141 RchiOBHm_Chr5g0050931 RchiOBHm_Chr5g0051001 RchiOBHm_Chr5g0051021 RchiOBHm_Chr6g0267491
rosa_laevigata RLG00000013999 RLG00000028502 RLG00000034744 RLG00000034748 RLG00000034753
rosa_multiflora Rmu_sc0000446.1_g000056 Rmu_sc0000782.1_g000006 Rmu_sc0002951.1_g000001 Rmu_sc0003674.1_g000026 Rmu_sc0003756.1_g000004 Rmu_sc0011917.1_g000004 Rmu_sc0012005.1_g000019 Rmu_sc0040739.1_g000001
rosa_roxburghii Rroxscaffold_1G00029730 Rroxscaffold_1G00029740 Rroxscaffold_4G00305060 Rroxscaffold_7G00200710
rosa_rugosa Rorug01G0208400 Rorug05G0265200.1 Rorug05G0265300.1 Rorug05G0265400.1 Rorug05G0265500.1 Rorug05G0294000 Rorug06G0033100 Rorug06G0243300
rosa_samantha Rh1BG192100 Rh1BG192200 Rh1DG220600 Rh5AG270300 Rh5AG337200 Rh5AG337700 Rh5BG346700 Rh5BG347400 Rh5CG374300 Rh5DG359700 Rh5DG360500 Rh6AG154500 Rh6BG155100 Rh6BG362300 Rh6CG150300 Rh6DG140300 Rh6DG356300
rosa_wichuraiana Rw0G018820 Rw1G019350 Rw5G025300 Rw5G031770 Rw5G031820 Rw5G031870 Rw5G031910 Rw6G013250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 95, 473
AccBSI CCGCTC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 193
AciI CCGC 1 cut(s) 366
AcsI RAATTY 2 cut(s) 84, 332
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 4 cut(s) 136, 241, 273, 332
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 4 cut(s) 47, 119, 400, 490
AluI AGCT 4 cut(s) 47, 119, 400, 490
AlwNI CAGNNNCTG 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 84, 332
ArsI GACNNNNNNTTYG 1 cut(s) 36
AseI ATTAAT 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 167, 294
BauI CACGAG 1 cut(s) 170
BbvI GCAGC 1 cut(s) 128
BccI CCATC 1 cut(s) 152
BciVI GTATCC 1 cut(s) 259
BfuI GTATCC 1 cut(s) 259
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 413
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 118
Bse8I GATNNNNATC 1 cut(s) 413
BseCI ATCGAT 1 cut(s) 298
BseGI GGATG 2 cut(s) 31, 230
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 415
BseXI GCAGC 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 366
BshVI ATCGAT 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 258
Bsp143I GATC 3 cut(s) 295, 299, 373
BspACI CCGC 1 cut(s) 366
BspCNI CTCAG 1 cut(s) 414
BspDI ATCGAT 1 cut(s) 298
BspHI TCATGA 1 cut(s) 282
BsrBI CCGCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 118
BssMI GATC 3 cut(s) 295, 299, 373
BssSI CACGAG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 170
Bst4CI ACNGT 3 cut(s) 78, 247, 349
BstC8I GCNNGC 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 2 cut(s) 31, 230
BstKTI GATC 3 cut(s) 298, 302, 376
BstMBI GATC 3 cut(s) 295, 299, 373
BstMCI CGRYCG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 128
Bsu15I ATCGAT 1 cut(s) 298
BsuI GTATCC 1 cut(s) 259
BsuTUI ATCGAT 1 cut(s) 298
BtsCI GGATG 2 cut(s) 31, 230
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 398
CaiI CAGNNNCTG 1 cut(s) 76
CciI TCATGA 1 cut(s) 282
ClaI ATCGAT 1 cut(s) 298
CseI GACGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 100
CviAII CATG 4 cut(s) 65, 146, 283, 495
CviJI RGCY 7 cut(s) 47, 73, 119, 162, 177, 400, 490
CviKI_1 RGCY 7 cut(s) 47, 73, 119, 162, 177, 400, 490
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 401
DpnI GATC 3 cut(s) 297, 301, 375
DpnII GATC 3 cut(s) 295, 299, 373
DraI TTTAAA 1 cut(s) 520
EcoRI GAATTC 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 151
FaeI CATG 4 cut(s) 68, 149, 286, 498
FatI CATG 4 cut(s) 64, 145, 282, 494
FauNDI CATATG 1 cut(s) 9
FblI GTMKAC 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 38, 217
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HgaI GACGC 1 cut(s) 268
Hin1II CATG 4 cut(s) 68, 149, 286, 498
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 2 cut(s) 4, 378
HphI GGTGA 2 cut(s) 167, 294
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 3 cut(s) 253, 383, 404
Hpy188III TCNNGA 2 cut(s) 283, 371
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 518
HpyCH4III ACNGT 3 cut(s) 78, 247, 349
HpyCH4V TGCA 4 cut(s) 116, 142, 149, 430
HpyF3I CTNAG 1 cut(s) 401
Hsp92II CATG 4 cut(s) 68, 149, 286, 498
Kzo9I GATC 3 cut(s) 295, 299, 373
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 4 cut(s) 83, 202, 403, 527
Lsp1109I GCAGC 1 cut(s) 128
MalI GATC 3 cut(s) 297, 301, 375
MbiI CCGCTC 1 cut(s) 368
MboI GATC 3 cut(s) 295, 299, 373
MluCI AATT 4 cut(s) 84, 332, 342, 387
MnlI CCTC 3 cut(s) 179, 279, 325
Mph1103I ATGCAT 1 cut(s) 151
MseI TTAA 4 cut(s) 386, 390, 519, 550
MspA1I CMGCKG 1 cut(s) 119
NdeI CATATG 1 cut(s) 9
NdeII GATC 3 cut(s) 295, 299, 373
NlaIII CATG 4 cut(s) 68, 149, 286, 498
NsiI ATGCAT 1 cut(s) 151
PacI TTAATTAA 1 cut(s) 390
PagI TCATGA 1 cut(s) 282
PfeI GAWTC 2 cut(s) 4, 378
PkrI GCNGC 1 cut(s) 118
PshBI ATTAAT 1 cut(s) 386
PsiI TTATAA 2 cut(s) 95, 473
PstNI CAGNNNCTG 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 4 cut(s) 386, 390, 519, 550
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 295, 299, 373
SetI ASST 6 cut(s) 49, 121, 157, 402, 422, 492
Sse9I AATT 4 cut(s) 84, 332, 342, 387
SsiI CCGC 1 cut(s) 366
SspI AATATT 2 cut(s) 132, 434
TaaI ACNGT 3 cut(s) 78, 247, 349
TaqI TCGA 2 cut(s) 298, 376
TasI AATT 4 cut(s) 84, 332, 342, 387
TfiI GAWTC 2 cut(s) 4, 378
Tru1I TTAA 4 cut(s) 386, 390, 519, 550
Tru9I TTAA 4 cut(s) 386, 390, 519, 550
TscAI CASTG 1 cut(s) 81
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 17, 77, 483
TspRI CASTG 1 cut(s) 81
VspI ATTAAT 1 cut(s) 386
XapI RAATTY 2 cut(s) 84, 332
XmiI GTMKAC 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.