Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000700

Physical Location & Seq

Genomic Coordinates Reverse (-)

31002097 .. 31003356

Gene Structure 1260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGTGATCACTCAAAAGAGAAGACCAAGGTCAAGGTGGTCTGAGCTCCCTACAGAACTACTAGAGTTGATCATGAAAAAGCTTGCTTCTGTGGACATACTTCGCTTTGAAGCTGTCTGTTCTTGTTGGAATCAAGCTGCAAAATCTTATATCTCTGCCCCATATTTCACACTCGACATGCCTCAAACCCCATGGCTTATGATTCCTGGTGGTGAAGAAAACCATGTCCATACTCGCCGCTTCTTCAACCTCGCAGAGTTCAAGTACTACACTATTAAAAACGCGTTTGGAGATATTCCTGATGCCTGGTGTGTCGGTTCATCACATGGGTGGCTGGTCCTTACGGAGGAGAAAGGAACTGCTTGTCTTTTAAATCCGTTTTCTGGAGATAGGATTGAACTCCCATCAATACGGACACTGCATCCAGTCATAAGCAAGGATTATATCGCCAAAGCTGTCACCTCCTCCAAGCCACCATCGTCGTCATCCTCGTCTTCCAGTAAGGACTTCGTTGTTGCAATAATACTCTACTCTAATACGTGGATAACGCAACTTGCTTTCCATAGGCATGGAGACGATGCATGGACTGGCTTCGGCCAGAAGGGTACTGTCTATCATGACGGTATGTTCCACAGTACTAGTGGTCATTTTTTTGCATTGGCAACCGATTGCTCAGTTGAGGTTTGGGACTTGAGGAAATGTTTTCCCATAAAAACACTTCATCTGCAACCTTTTCGACACCGCCAATTAAACAATGACGATGATTTCAAATTTGATATTCAGAATTATTTGGTGGAGTCCTTGGGTGAAATTTTGTTGGTGAGGCGATTTATAGTGACGAAAATTTTTTATCATAAGGACCTACCCGATGTTATTCGTCCCTATAAAACCTCTCACTTTTATATCTACAGGCAGAAGTCCACTAGCTTAGGGTTCGAGTGGGAGAAGGTGGAAAGTTTGCACAATCGGGCTGTGTTTCTGGGTGGAAATCATTCAATGTCGTTATCTTCCCAGAACTTTCCAGAATGTGAAGAGAACTCAATTTACTTCACAGATCATAGGTGGGAAATGAACCCTAATAAATGCTTATCTGGTAAGAAGAGAATTGGCTATGGGGGTCATGATCTTGGAGTGTACAACGTGAAAGATAATATTATGAAGCCAATGCCATGTTATTTGACATTTGATCGCTGGATTATAAATCCACCACCCTTTTGGATTGTTCCTGATATAATCCATGGTTTTGGTAATGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

419

Amino Acids

48.3

Weight (kDa)

8.27

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	13 - 48	3.7e-06	F-box-like
F-box	PF00646	13 - 49	4.9e-06	F-box domain
Beta-prop_KIB1-4	PF03478	81 - 380	6.3e-53	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27550
fragaria_vesca	FvH4_3g40651 FvH4_3g40751 FvH4_3g43771 FvH4_4g04480 FvH4_4g26310 FvH4_4g26320 FvH4_4g30091 FvH4_6g03860 FvH4_7g10560
malus_domestica	MD13G1117600.v1.1 MD13G1223500.v1.1 MD16G1228400.v1.1
prunus_persica	Prupe.1G050400_v2.0.a1 Prupe.1G050500_v2.0.a1 Prupe.1G227500_v2.0.a1 Prupe.1G227900_v2.0.a1 Prupe.1G228000_v2.0.a1 Prupe.1G228100_v2.0.a1 Prupe.6G285500_v2.0.a1
pyrus_communis	pycom13g10170 pycom16g10020
rosa_chinensis	RchiOBHm_Chr1g0339581 RchiOBHm_Chr3g0452431 RchiOBHm_Chr4g0395201 RchiOBHm_Chr4g0430571 RchiOBHm_Chr4g0433901
rosa_laevigata	RLG00000006969 RLG00000009529 RLG00000009536 RLG00000009538 RLG00000009542 RLG00000009640 RLG00000025603 RLG00000029238 RLG00000036257
rosa_multiflora	Rmu_co8444313.1_g000001 Rmu_sc0000352.1_g000004 Rmu_sc0002149.1_g000002 Rmu_sc0006211.1_g000002 Rmu_sc0011680.1_g000008 Rmu_sc0011680.1_g000009 Rmu_ssc0000387.1_g000032
rosa_roxburghii	Rroxscaffold_1G00007830 Rroxscaffold_1G00009290 Rroxscaffold_4G00313550 Rroxscaffold_5G00340130 Rroxscaffold_5G00375300 Rroxscaffold_6G00429450
rosa_rugosa	Rorug01G0140200.1 Rorug01G0140500.1 Rorug01G0179500 Rorug02G0640800 Rorug03G0359000.1 Rorug04G0244300 Rorug05G0415200
rosa_samantha	Rh1AG158200 Rh3AG042600 Rh3BG044200 Rh4CG062400 Rh4CG074400 Rh4CG324100 Rh4CG324200 Rh4CG350200 Rh5AG471400 Rh5BG491100
rosa_wichuraiana	Rw1G013110 Rw3G003280 Rw4G004620 Rw4G005740 Rw4G005750 Rw4G028350 Rw5G043800 Rw5G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1199
AccII	CGCG	1 cut(s)	284
AciI	CCGC	2 cut(s)	238, 742
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	3 cut(s)	770, 810, 843
AfaI	GTAC	4 cut(s)	266, 607, 637, 1136
AfiI	CCNNNNNNNGG	2 cut(s)	346, 383
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	6 cut(s)	110, 247, 262, 398, 769, 996
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	2 cut(s)	205, 305
AleI	CACNNNNGTG	1 cut(s)	328
AluBI	AGCT	7 cut(s)	46, 82, 113, 137, 455, 927, 1257
AluI	AGCT	7 cut(s)	46, 82, 113, 137, 455, 927, 1257
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	567
AoxI	GGCC	1 cut(s)	595
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	3 cut(s)	770, 810, 843
Asp700I	GAANNNNTTC	1 cut(s)	991
AspS9I	GGNCC	2 cut(s)	337, 859
AsuHPI	GGTGA	5 cut(s)	16, 224, 451, 818, 832
AvaII	GGWCC	2 cut(s)	337, 859
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	28, 486
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	412, 484
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciT130I	CCWGG	2 cut(s)	207, 307
BclI	TGATCA	2 cut(s)	6, 69
BcoDI	GTCTC	1 cut(s)	567
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	3 cut(s)	62, 639, 924
BfmI	CTRYAG	2 cut(s)	51, 907
BisI	GCNGC	2 cut(s)	138, 238
BlsI	GCNGC	2 cut(s)	139, 239
BmcAI	AGTACT	2 cut(s)	266, 637
Bme1390I	CCNGG	2 cut(s)	207, 307
Bme18I	GGWCC	2 cut(s)	337, 859
BmgT120I	GGNCC	2 cut(s)	337, 859
BmrFI	CCNGG	2 cut(s)	207, 307
BmsI	GCATC	3 cut(s)	292, 430, 568
BoxI	GACNNNNGTC	1 cut(s)	28
BpiI	GAAGAC	2 cut(s)	28, 486
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	928
BpuEI	CTTGAG	1 cut(s)	712
BsaAI	YACGTR	1 cut(s)	540
BsaJI	CCNNGG	4 cut(s)	26, 191, 801, 1237
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 383
Bse1I	ACTGG	3 cut(s)	425, 498, 592
BseBI	CCWGG	2 cut(s)	207, 307
BseDI	CCNNGG	4 cut(s)	26, 191, 801, 1237
BseGI	GGATG	2 cut(s)	421, 485
BseLI	CCNNNNNNNGG	2 cut(s)	346, 383
BseMII	CTCAG	2 cut(s)	33, 687
BseNI	ACTGG	3 cut(s)	425, 498, 592
BseRI	GAGGAG	2 cut(s)	362, 454
BseXI	GCAGC	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	701, 864
BslI	CCNNNNNNNGG	2 cut(s)	346, 383
BsmAI	GTCTC	1 cut(s)	567
BsmBI	CGTCTC	1 cut(s)	567
BsmFI	GGGAC	2 cut(s)	701, 864
BsnI	GGCC	1 cut(s)	597
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp1407I	TGTACA	1 cut(s)	1134
Bsp143I	GATC	5 cut(s)	6, 69, 1054, 1123, 1186
Bsp19I	CCATGG	2 cut(s)	191, 1237
BspACI	CCGC	2 cut(s)	238, 742
BspANI	GGCC	1 cut(s)	597
BspCNI	CTCAG	2 cut(s)	34, 686
BspFNI	CGCG	1 cut(s)	284
BspHI	TCATGA	3 cut(s)	72, 616, 1120
BsrGI	TGTACA	1 cut(s)	1134
BsrI	ACTGG	3 cut(s)	425, 498, 592
BssECI	CCNNGG	4 cut(s)	26, 191, 801, 1237
BssMI	GATC	5 cut(s)	6, 69, 1054, 1123, 1186
BssT1I	CCWWGG	4 cut(s)	26, 191, 801, 1237
Bst2UI	CCWGG	2 cut(s)	207, 307
Bst4CI	ACNGT	3 cut(s)	610, 623, 635
Bst6I	CTCTTC	2 cut(s)	1026, 1094
BstAUI	TGTACA	1 cut(s)	1134
BstBAI	YACGTR	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	42, 673, 928
BstDSI	CCRYGG	2 cut(s)	191, 1237
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	421, 485
BstFNI	CGCG	1 cut(s)	284
BstKTI	GATC	5 cut(s)	9, 72, 1057, 1126, 1189
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	5 cut(s)	6, 69, 1054, 1123, 1186
BstNI	CCWGG	2 cut(s)	207, 307
BstNSI	RCATGY	1 cut(s)	181
BstPAI	GACNNNNGTC	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	205, 305
BstSFI	CTRYAG	2 cut(s)	51, 907
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	2 cut(s)	28, 486
BstXI	CCANNNNNNTGG	3 cut(s)	569, 1215, 1244
BsuRI	GGCC	1 cut(s)	597
BtgI	CCRYGG	2 cut(s)	191, 1237
BtsCI	GGATG	2 cut(s)	421, 485
BtsI	GCAGTG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	3 cut(s)	72, 616, 1120
Cfr13I	GGNCC	2 cut(s)	337, 859
Csp6I	GTAC	4 cut(s)	265, 606, 636, 1135
CviQI	GTAC	4 cut(s)	265, 606, 636, 1135
DdeI	CTNAG	3 cut(s)	42, 673, 928
DpnI	GATC	5 cut(s)	8, 71, 1056, 1125, 1188
DpnII	GATC	5 cut(s)	6, 69, 1054, 1123, 1186
DraI	TTTAAA	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	595
Eam1104I	CTCTTC	2 cut(s)	1026, 1094
EarI	CTCTTC	2 cut(s)	1026, 1094
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	4 cut(s)	26, 191, 801, 1237
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	337, 859
Eco53kI	GAGCTC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	859
EcoRII	CCWGG	2 cut(s)	205, 305
EcoT14I	CCWWGG	4 cut(s)	26, 191, 801, 1237
EcoT22I	ATGCAT	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	4 cut(s)	26, 191, 801, 1237
Esp3I	CGTCTC	1 cut(s)	567
FaqI	GGGAC	2 cut(s)	701, 864
FbaI	TGATCA	2 cut(s)	6, 69
Fnu4HI	GCNGC	2 cut(s)	138, 238
FokI	GGATG	2 cut(s)	408, 472
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	138, 238
FspBI	CTAG	3 cut(s)	62, 639, 924
GluI	GCNGC	2 cut(s)	138, 238
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	130, 202, 797
HphI	GGTGA	5 cut(s)	16, 224, 451, 818, 832
Hpy166II	GTNNAC	3 cut(s)	94, 921, 1135
Hpy188I	TCNGA	2 cut(s)	43, 783
Hpy188III	TCNNGA	7 cut(s)	73, 299, 384, 617, 1022, 1121, 1226
Hpy8I	GTNNAC	3 cut(s)	94, 921, 1135
Hpy99I	CGWCG	1 cut(s)	484
HpyAV	CCTTC	2 cut(s)	595, 940
HpyCH4III	ACNGT	3 cut(s)	610, 623, 635
HpyCH4IV	ACGT	2 cut(s)	539, 1140
HpyCH4V	TGCA	7 cut(s)	140, 421, 518, 581, 656, 727, 961
HpyF3I	CTNAG	3 cut(s)	42, 673, 928
HpySE526I	ACGT	2 cut(s)	539, 1140
Ksp22I	TGATCA	2 cut(s)	6, 69
Kzo9I	GATC	5 cut(s)	6, 69, 1054, 1123, 1186
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	3 cut(s)	292, 430, 568
MaeI	CTAG	3 cut(s)	62, 639, 924
MaeII	ACGT	2 cut(s)	539, 1140
MaeIII	GTNAC	2 cut(s)	457, 835
MalI	GATC	5 cut(s)	8, 71, 1056, 1125, 1188
MboI	GATC	5 cut(s)	6, 69, 1054, 1123, 1186
MboII	GAAGA	7 cut(s)	33, 227, 235, 486, 999, 1043, 1111
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	7 cut(s)	746, 770, 784, 810, 843, 1041, 1104
MluI	ACGCGT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	991
MseI	TTAA	3 cut(s)	276, 371, 749
MslI	CAYNNNNRTG	2 cut(s)	328, 567
MspR9I	CCNGG	2 cut(s)	207, 307
MvaI	CCWGG	2 cut(s)	207, 307
MvnI	CGCG	1 cut(s)	284
NcoI	CCATGG	2 cut(s)	191, 1237
NdeII	GATC	5 cut(s)	6, 69, 1054, 1123, 1186
NmuCI	GTSAC	2 cut(s)	457, 835
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	328
PagI	TCATGA	3 cut(s)	72, 616, 1120
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PdmI	GAANNNNTTC	1 cut(s)	991
PfeI	GAWTC	2 cut(s)	130, 202
PkrI	GCNGC	2 cut(s)	139, 239
PleI	GAGTC	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	805
Ppu21I	YACGTR	1 cut(s)	540
PpuMI	RGGWCCY	1 cut(s)	859
PshAI	GACNNNNGTC	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	1199
Psp124BI	GAGCTC	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	859
Psp6I	CCWGG	2 cut(s)	205, 305
PspGI	CCWGG	2 cut(s)	205, 305
PspPI	GGNCC	2 cut(s)	337, 859
PspPPI	RGGWCCY	1 cut(s)	859
PsrI	GAACNNNNNNTAC	2 cut(s)	1028, 1060
RsaI	GTAC	4 cut(s)	266, 607, 637, 1136
RsaNI	GTAC	4 cut(s)	265, 606, 636, 1135
RseI	CAYNNNNRTG	2 cut(s)	328, 567
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	276, 371, 749
SatI	GCNGC	2 cut(s)	138, 238
Sau3AI	GATC	5 cut(s)	6, 69, 1054, 1123, 1186
Sau96I	GGNCC	2 cut(s)	337, 859
ScaI	AGTACT	2 cut(s)	266, 637
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	207, 307
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	3 cut(s)	292, 430, 568
SfcI	CTRYAG	2 cut(s)	51, 907
SinI	GGWCC	2 cut(s)	337, 859
SmiMI	CAYNNNNRTG	2 cut(s)	328, 567
SmlI	CTYRAG	1 cut(s)	691
SmoI	CTYRAG	1 cut(s)	691
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	7 cut(s)	746, 770, 784, 810, 843, 1041, 1104
SsiI	CCGC	2 cut(s)	238, 742
SspI	AATATT	1 cut(s)	1153
SspMI	CTAG	3 cut(s)	62, 639, 924
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	205, 305
StyI	CCWWGG	4 cut(s)	26, 191, 801, 1237
TaaI	ACNGT	3 cut(s)	610, 623, 635
TaiI	ACGT	2 cut(s)	542, 1143
TaqI	TCGA	3 cut(s)	174, 736, 936
TasI	AATT	7 cut(s)	746, 770, 784, 810, 843, 1041, 1104
TatI	WGTACW	3 cut(s)	264, 635, 1134
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	130, 202
Tru1I	TTAA	3 cut(s)	276, 371, 749
Tru9I	TTAA	3 cut(s)	276, 371, 749
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	2 cut(s)	457, 835
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	2 cut(s)	457, 835
TspDTI	ATGAA	5 cut(s)	89, 309, 710, 1085, 1172
TspGWI	ACGGA	3 cut(s)	359, 366, 427
TspRI	CASTG	1 cut(s)	423
VpaK11BI	GGWCC	2 cut(s)	337, 859
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	3 cut(s)	770, 810, 843
XceI	RCATGY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	3 cut(s)	33, 638, 1212
XmnI	GAANNNNTTC	1 cut(s)	991
XspI	CTAG	3 cut(s)	62, 639, 924
ZrmI	AGTACT	2 cut(s)	266, 637
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.