Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Reverse (-)

34683066 .. 34685024

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAGCAAAATCTATTCAGACTGAAAAGCAACGACAAGTTCCCACCTCTACGGCTCCTACTATCAAAACTACCAACATGGAGTATTATATTTGCCAACATAACTAATAATTGGGGATACTTTGTTCTGCTTTCTTGGATGCCTGTTTATTTCAAGACTGTATTTAATGTAAACTTGAAACAAGCAGCTTGGTTTAGTGCTGTTCCATGGGGAACAATGGCAATTTCCAGCTGCATTGCTGGCACAACATCAGATTTCTTAATCAAGGCTGGCTACTCTTTGACGATAGTCCGAAAGATCATGCAGTCCATTGGTTTCATTGGGCCTGGAGTGTCATTGCTGTGCTTGAACTATGCCAACACACCCACGGCTGCAGCGGTACTCCTTACAGCAGCCTTATGTTTGAGCTCTTTCAGTCAAGCTGGCTTTCTCCTCAATATACAATGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

162

Amino Acids

18.0

Weight (kDa)

9.76

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	14 - 142	1.4e-07	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	377
AfaI	GTAC	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	154, 178, 349
AjnI	CCWGG	1 cut(s)	325
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	4 cut(s)	188, 231, 408, 422
AluI	AGCT	4 cut(s)	188, 231, 408, 422
Alw21I	GWGCWC	1 cut(s)	410
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	5 cut(s)	185, 231, 371, 374, 392
AspS9I	GGNCC	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	5 cut(s)	197, 218, 358, 386, 404
BceAI	ACGGC	2 cut(s)	68, 384
BciT130I	CCWGG	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	110
BisI	GCNGC	5 cut(s)	186, 232, 372, 375, 393
BlsI	GCNGC	5 cut(s)	187, 233, 373, 376, 394
Bme1390I	CCNGG	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	129
BoxI	GACNNNNGTC	1 cut(s)	287
BpmI	CTGGAG	2 cut(s)	348, 469
BsaJI	CCNNGG	2 cut(s)	206, 366
Bse3DI	GCAATG	2 cut(s)	234, 335
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	206, 366
BseGI	GGATG	1 cut(s)	144
BseMI	GCAATG	2 cut(s)	234, 335
BseRI	GAGGAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	5 cut(s)	197, 218, 358, 386, 404
BshFI	GGCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	410, 482
Bsp143I	GATC	1 cut(s)	297
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	56
BspMAI	CTGCAG	1 cut(s)	376
BsrDI	GCAATG	2 cut(s)	234, 335
BssECI	CCNNGG	2 cut(s)	206, 366
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	241, 271, 424
BstDSI	CCRYGG	2 cut(s)	206, 366
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstNI	CCWGG	1 cut(s)	327
BstPAI	GACNNNNGTC	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	5 cut(s)	197, 218, 358, 386, 404
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	325
BtgI	CCRYGG	2 cut(s)	206, 366
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	3 cut(s)	241, 271, 424
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	3 cut(s)	78, 207, 301
CviQI	GTAC	1 cut(s)	380
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	81, 210, 304
FatI	CATG	3 cut(s)	77, 206, 300
FauNDI	CATATG	1 cut(s)	473
Fnu4HI	GCNGC	5 cut(s)	186, 232, 372, 375, 393
FokI	GGATG	1 cut(s)	151
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	5 cut(s)	186, 232, 372, 375, 393
GluI	GCNGC	5 cut(s)	186, 232, 372, 375, 393
GsuI	CTGGAG	2 cut(s)	348, 469
HaeIII	GGCC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	81, 210, 304
Hpy166II	GTNNAC	2 cut(s)	172, 467
Hpy188I	TCNGA	3 cut(s)	20, 253, 293
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	172, 467
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	234, 304, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	81, 210, 304
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	8 cut(s)	156, 225, 241, 255, 312, 339, 408, 433
Lsp1109I	GCAGC	5 cut(s)	197, 218, 358, 386, 404
LweI	GCATC	1 cut(s)	129
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	410, 482
MluCI	AATT	2 cut(s)	109, 222
MnlI	CCTC	2 cut(s)	57, 443
MseI	TTAA	2 cut(s)	165, 260
MslI	CAYNNNNRTG	2 cut(s)	340, 472
MspA1I	CMGCKG	2 cut(s)	231, 377
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	240
NcoI	CCATGG	1 cut(s)	206
NdeI	CATATG	1 cut(s)	473
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	3 cut(s)	81, 210, 304
NlaIV	GGNNCC	1 cut(s)	56
PkrI	GCNGC	5 cut(s)	187, 233, 373, 376, 394
PshAI	GACNNNNGTC	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	231
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
RseI	CAYNNNNRTG	2 cut(s)	340, 472
SacI	GAGCTC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	165, 260
SatI	GCNGC	5 cut(s)	186, 232, 372, 375, 393
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	2 cut(s)	410, 482
SetI	ASST	5 cut(s)	49, 190, 233, 410, 424
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	2 cut(s)	340, 472
Sse9I	AATT	2 cut(s)	109, 222
SsiI	CCGC	1 cut(s)	377
SstI	GAGCTC	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	160
TasI	AATT	2 cut(s)	109, 222
Tru1I	TTAA	2 cut(s)	165, 260
Tru9I	TTAA	2 cut(s)	165, 260
TscAI	CASTG	1 cut(s)	487
TseI	GCWGC	5 cut(s)	185, 231, 371, 374, 392
TspDTI	ATGAA	2 cut(s)	17, 307
TspRI	CASTG	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.