Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

65769763 .. 65773662

Gene Structure 3900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGCTTAGAGGAGGCACTCACTCTTGCTCGTGTTTTCAGCCGTTACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGGGTTCATAGACAAAAGAATGTGGCATCCCTATCAAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCGTGATGTTTCCCCAGACCACCTTTACGATACCGTTTGCAAGCAGGAGGTCGAGATTGCTCTTACTGCACACATCCTACACAAATTAATCGCGGAACCTTACAATACAAACATATCAGACTTTCTGTTACATCTTTTAAATTTAAGAGACCGATCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCAGGTGCGAGAGATAACTTCTGTACGGCAAACAGATGAGCTTAGGCACTATAAACCCACACCAGTTGATGAAGCTAGGGCAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTACGTCGTGTCAGCAATGCTTTAAAGAAGGTTTCACACTGGGAAACTGGAAAACCACTTCCGTTGAAATGCACACCAATTAGGTTTGGGTCTAGGATGCGGGGTGATCAAGATGAAAATCCCAATGTGACAGCAAAGGAACTCATGGGTCTTATTGATATTTCATTCATAAATCTTCTCCTAGTGGTCACAAAAGATGTCTCGCTTTTATCTAGGTGGATGACTATTGATCTCTATATTAGAGAAGTTGATAACCTGAAATTTGAACTATCCATGAATTGGTGCAGCGATAGCTTGTCAAAACTGGCACAAGAGATTCTAGAGCACGAATCTGCATCTGAGGATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

275

Amino Acids

31.75

Weight (kDa)

5.74

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	1 - 265	3.1e-42	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	419
AccB7I	CCANNNNNTGG	1 cut(s)	756
AccII	CGCG	1 cut(s)	245
AciI	CCGC	2 cut(s)	245, 577
AcsI	RAATTY	2 cut(s)	292, 737
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	372, 468
AfiI	CCNNNNNNNGG	1 cut(s)	756
AgsI	TTSAA	4 cut(s)	344, 436, 544, 743
AhlI	ACTAGT	1 cut(s)	317
AluBI	AGCT	6 cut(s)	6, 145, 388, 422, 464, 771
AluI	AGCT	6 cut(s)	6, 145, 388, 422, 464, 771
Alw21I	GWGCWC	1 cut(s)	804
Alw26I	GTCTC	2 cut(s)	294, 682
AlwNI	CAGNNNCTG	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	151, 762
ApoI	RAATTY	2 cut(s)	292, 737
AseI	ATTAAT	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	349, 593
BauI	CACGAG	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	804
BbvI	GCAGC	2 cut(s)	163, 774
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	2 cut(s)	27, 389
BclI	TGATCA	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	294, 682
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	7 cut(s)	318, 423, 570, 659, 690, 797, 826
BfmI	CTRYAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	419
BisI	GCNGC	2 cut(s)	152, 763
BlsI	GCNGC	2 cut(s)	153, 764
BmiI	GGNNCC	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	3 cut(s)	116, 564, 821
BmuI	ACTGGG	1 cut(s)	526
BpiI	GAAGAC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	756
Bse1I	ACTGG	4 cut(s)	410, 521, 529, 786
Bse3DI	GCAATG	2 cut(s)	63, 499
Bse8I	GATNNNNATC	1 cut(s)	594
BseGI	GGATG	4 cut(s)	107, 225, 579, 702
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	1 cut(s)	756
BseMI	GCAATG	2 cut(s)	63, 499
BseMII	CTCAG	1 cut(s)	807
BseNI	ACTGG	4 cut(s)	410, 521, 529, 786
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	163, 774
BsgI	GTGCAG	2 cut(s)	204, 781
Bsh1236I	CGCG	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	804
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	756
BsmAI	GTCTC	2 cut(s)	294, 682
BsmFI	GGGAC	1 cut(s)	436
Bso31I	GGTCTC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	804
Bsp143I	GATC	6 cut(s)	305, 310, 346, 583, 706, 820
BspACI	CCGC	2 cut(s)	245, 577
BspCNI	CTCAG	1 cut(s)	808
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	294
BsrDI	GCAATG	2 cut(s)	63, 499
BsrI	ACTGG	4 cut(s)	410, 521, 529, 786
BssMI	GATC	6 cut(s)	305, 310, 346, 583, 706, 820
BssSI	CACGAG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	7, 389, 816
BstF5I	GGATG	4 cut(s)	107, 225, 579, 702
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	6 cut(s)	308, 313, 349, 586, 709, 823
BstMAI	GTCTC	2 cut(s)	294, 682
BstMBI	GATC	6 cut(s)	305, 310, 346, 583, 706, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 218, 768
BstSFI	CTRYAG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	163, 774
BstV2I	GAAGAC	1 cut(s)	330
BtsCI	GGATG	4 cut(s)	107, 225, 579, 702
BtsIMutI	CAGTG	1 cut(s)	514
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	371, 467
CspCI	CAANNNNNGTGG	4 cut(s)	394, 429, 522, 557
CviAII	CATG	2 cut(s)	622, 751
CviJI	RGCY	7 cut(s)	6, 42, 145, 388, 422, 464, 771
CviKI_1	RGCY	7 cut(s)	6, 42, 145, 388, 422, 464, 771
CviQI	GTAC	2 cut(s)	371, 467
DdeI	CTNAG	3 cut(s)	7, 389, 816
DpnI	GATC	6 cut(s)	307, 312, 348, 585, 708, 822
DpnII	GATC	6 cut(s)	305, 310, 346, 583, 706, 820
DraI	TTTAAA	2 cut(s)	291, 501
Eco31I	GGTCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	90
FaeI	CATG	2 cut(s)	625, 754
FaiI	YATR	8 cut(s)	90, 266, 335, 399, 623, 647, 714, 752
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	2 cut(s)	621, 750
FauI	CCCGC	1 cut(s)	570
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	2 cut(s)	152, 763
FokI	GGATG	4 cut(s)	94, 212, 586, 709
Fsp4HI	GCNGC	2 cut(s)	152, 763
FspBI	CTAG	7 cut(s)	318, 423, 570, 659, 690, 797, 826
GluI	GCNGC	2 cut(s)	152, 763
Hin1II	CATG	2 cut(s)	625, 754
HinfI	GANTC	2 cut(s)	793, 806
HphI	GGTGA	2 cut(s)	349, 593
Hpy188I	TCNGA	3 cut(s)	271, 310, 817
Hpy188III	TCNNGA	3 cut(s)	205, 587, 797
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	6 cut(s)	151, 192, 221, 549, 762, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 218, 768
HpyF3I	CTNAG	3 cut(s)	7, 389, 816
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	2 cut(s)	625, 754
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	6 cut(s)	305, 310, 346, 583, 706, 820
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	2 cut(s)	163, 774
LweI	GCATC	3 cut(s)	116, 564, 821
MaeI	CTAG	7 cut(s)	318, 423, 570, 659, 690, 797, 826
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	4 cut(s)	44, 279, 604, 664
MalI	GATC	6 cut(s)	307, 312, 348, 585, 708, 822
MboI	GATC	6 cut(s)	305, 310, 346, 583, 706, 820
MboII	GAAGA	3 cut(s)	335, 356, 644
MhlI	GDGCHC	1 cut(s)	804
MluCI	AATT	6 cut(s)	52, 236, 292, 555, 737, 754
MnlI	CCTC	6 cut(s)	4, 7, 59, 193, 480, 811
MseI	TTAA	5 cut(s)	138, 239, 290, 296, 500
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	151, 218, 768
NdeII	GATC	6 cut(s)	305, 310, 346, 583, 706, 820
NlaIII	CATG	2 cut(s)	625, 754
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	2 cut(s)	604, 664
PfeI	GAWTC	2 cut(s)	793, 806
PflMI	CCANNNNNTGG	1 cut(s)	756
PkrI	GCNGC	2 cut(s)	153, 764
PshBI	ATTAAT	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	372, 468
RsaNI	GTAC	2 cut(s)	371, 467
SaqAI	TTAA	5 cut(s)	138, 239, 290, 296, 500
SatI	GCNGC	2 cut(s)	152, 763
Sau3AI	GATC	6 cut(s)	305, 310, 346, 583, 706, 820
SduI	GDGCHC	1 cut(s)	804
SfaNI	GCATC	3 cut(s)	116, 564, 821
SfcI	CTRYAG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	6 cut(s)	52, 236, 292, 555, 737, 754
SsiI	CCGC	2 cut(s)	245, 577
SspMI	CTAG	7 cut(s)	318, 423, 570, 659, 690, 797, 826
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	6 cut(s)	52, 236, 292, 555, 737, 754
TfiI	GAWTC	2 cut(s)	793, 806
Tru1I	TTAA	5 cut(s)	138, 239, 290, 296, 500
Tru9I	TTAA	5 cut(s)	138, 239, 290, 296, 500
TscAI	CASTG	1 cut(s)	521
TseFI	GTSAC	2 cut(s)	604, 664
TseI	GCWGC	2 cut(s)	151, 762
Tsp45I	GTSAC	2 cut(s)	604, 664
TspDTI	ATGAA	7 cut(s)	65, 77, 432, 606, 630, 634, 767
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	1 cut(s)	521
Van91I	CCANNNNNTGG	1 cut(s)	756
VspI	ATTAAT	1 cut(s)	239
XapI	RAATTY	2 cut(s)	292, 737
XbaI	TCTAGA	1 cut(s)	796
XspI	CTAG	7 cut(s)	318, 423, 570, 659, 690, 797, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.