Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

69352519 .. 69355098

Gene Structure 2580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33978

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGGGGTGGTCGAGATGGAAATCCCAATGTCACAGCAAAGGTCACAAAAGATGTCTCGCTTTTATCTAGGTGGATGACTATTGATCTCTATATTAGAGAAGTGGATAGCCTGAAATTTGAACTATCCATGAATTGGTGCAGTAATAGCTTGTCAAAACTGGCACAAGAGATTCTAGAGCACAGTATGACATATTGCAGTTATTTTCAGTGGTCATTAATATTGGCTGCTTGGTATCATGTGGAGACTACCAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

86

Amino Acids

9.88

Weight (kDa)

6.04

Isoelectric Point (pI)

26.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	1 - 58	7.9e-15	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	122
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	2 cut(s)	61, 239
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	116
AseI	ATTAAT	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	11
BcoDI	GTCTC	2 cut(s)	61, 239
BfaI	CTAG	2 cut(s)	69, 176
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BsaBI	GATNNNNATC	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	21
BseGI	GGATG	1 cut(s)	81
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	61, 239
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	2 cut(s)	61, 239
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	215
CviAII	CATG	2 cut(s)	130, 239
CviJI	RGCY	3 cut(s)	111, 150, 227
CviKI_1	RGCY	3 cut(s)	111, 150, 227
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
FaeI	CATG	2 cut(s)	133, 242
FaiI	YATR	6 cut(s)	93, 131, 188, 193, 240, 259
FatI	CATG	2 cut(s)	129, 238
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	69, 176
GluI	GCNGC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	133, 242
HinfI	GANTC	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	14, 176
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	141, 198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	133, 242
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	2 cut(s)	125, 146
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	69, 176
MaeIII	GTNAC	2 cut(s)	31, 43
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	2 cut(s)	116, 133
MseI	TTAA	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	147
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	133, 242
NmuCI	GTSAC	2 cut(s)	31, 43
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	229
PshBI	ATTAAT	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	3 cut(s)	45, 74, 152
Sse9I	AATT	2 cut(s)	116, 133
SspI	AATATT	1 cut(s)	222
SspMI	CTAG	2 cut(s)	69, 176
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	13
TasI	AATT	2 cut(s)	116, 133
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	215
TseFI	GTSAC	2 cut(s)	31, 43
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	2 cut(s)	31, 43
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	215
Van91I	CCANNNNNTGG	1 cut(s)	135
VspI	ATTAAT	1 cut(s)	218
XapI	RAATTY	1 cut(s)	116
XbaI	TCTAGA	1 cut(s)	175
XspI	CTAG	2 cut(s)	69, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.