Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

12480426 .. 12482937

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00009990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTTGTTCCTGGTCACAAAAGATGTAACACTTTTATCTAGGTGGATAACTATTGATCTGTATATTCGAGAAGTTGAAAGCATGAAATTTGAACTATCGATGAATAGATGCAGTGATAGCTTGTCAAAACTGGAGCAAGTTGCTTGCCCATTTTGCGGTGTTTCAGTCTACGATAGGTCACTGCTCAGGTGCTTTTGGGGTTTGGAAGCTAATGGTAGAGTGAAATCAATACAACCAGGATGGCTCCGTCATTCCCTAAACCAATATGTTGTCCATATCAAAGAAGAGGTTCAGCTGTGGGGAGGAAGAGTCTTGGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

107

Amino Acids

12.45

Weight (kDa)

7.68

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	77, 92
AjnI	CCWGG	2 cut(s)	9, 235
AluBI	AGCT	3 cut(s)	120, 209, 295
AluI	AGCT	3 cut(s)	120, 209, 295
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	288
BccI	CCATC	1 cut(s)	234
BciT130I	CCWGG	2 cut(s)	11, 237
BfaI	CTAG	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	11, 237
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	2 cut(s)	11, 237
BmsI	GCATC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	11, 237
BseCI	ATCGAT	1 cut(s)	98
BseGI	GGATG	2 cut(s)	245, 322
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	198
BspDI	ATCGAT	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	11, 237
Bst6I	CTCTTC	2 cut(s)	279, 301
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	2 cut(s)	245, 322
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 153
BstNI	CCWGG	2 cut(s)	11, 237
BstSCI	CCNGG	2 cut(s)	9, 235
Bsu15I	ATCGAT	1 cut(s)	98
BsuTUI	ATCGAT	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	245, 322
BtsI	GCAGTG	2 cut(s)	118, 179
BtsIMutI	CAGTG	2 cut(s)	118, 179
Cac8I	GCNNGC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	98
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	4 cut(s)	120, 209, 244, 295
CviKI_1	RGCY	4 cut(s)	120, 209, 244, 295
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	279, 301
EarI	CTCTTC	2 cut(s)	279, 301
EcoRII	CCWGG	2 cut(s)	9, 235
FaeI	CATG	1 cut(s)	85
FaiI	YATR	4 cut(s)	63, 83, 267, 276
FatI	CATG	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	168
FokI	GGATG	1 cut(s)	252
FspBI	CTAG	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	152
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	1 cut(s)	309
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 153
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	2 cut(s)	133, 249
LpnPI	CCDG	5 cut(s)	23, 116, 172, 222, 249
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	13, 25, 177
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	296, 318
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	318
MnlI	CCTC	2 cut(s)	280, 296
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	1 cut(s)	322
MspA1I	CMGCKG	1 cut(s)	295
MspR9I	CCNGG	2 cut(s)	11, 237
MvaI	CCWGG	2 cut(s)	11, 237
MwoI	GCNNNNNNNGC	2 cut(s)	117, 153
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	2 cut(s)	13, 177
PdmI	GAANNNNTTC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	9, 235
PspGI	CCWGG	2 cut(s)	9, 235
PspN4I	GGNNCC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	322
Sau3AI	GATC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	2 cut(s)	11, 237
SetI	ASST	7 cut(s)	44, 122, 179, 191, 211, 291, 297
SfaNI	GCATC	1 cut(s)	98
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	9, 235
TaqI	TCGA	2 cut(s)	67, 98
TasI	AATT	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TscAI	CASTG	2 cut(s)	118, 186
TseFI	GTSAC	2 cut(s)	13, 177
Tsp45I	GTSAC	2 cut(s)	13, 177
TspDTI	ATGAA	2 cut(s)	98, 116
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	2 cut(s)	118, 186
XapI	RAATTY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.