Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

1274344 .. 1274937

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0008200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGACCACATACCTGGCAACCAACGAGACCACAAACCTGGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACGTGCTTTGCAGTCGGAGCAGTACCAGGTGGACTCCCACTCCAAATCAGATAAGAATCCTCAATGATCTTTTCTATAGCAAGGGCGTTAGGTCCCCAACTGTAGAGCAGGTTCAGCGGATCTATTTTCATTTGAGACGGTACGGACAGATCGAGGCCAAGAATGTCTTTTATTGGTTCCAGAACCATAAGGCTCGGGATAAACGGAAGAAGAAGATCACTTCGGATGTTCATGTGCCTATACAAAGATTAGGGCTTGTTGGTGGATCCATTAATCTTAATTTTGGGTCAACTAGCTCTACTGTTATGGAACAGAGAGGAGAAGATCACCAGGCGATTGAAACTCTTCCACTGTTCCCCATGCACAGTGAAGACATCTTGGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGCTATGGCGATTGGGGCGGCTACAACGATGGTTCTCGCATTTCCCTTGAGCTCAGCCTCAACTTCTCCGGAGCTGCTGGCAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

197

Amino Acids

22.04

Weight (kDa)

9.67

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	39 - 99	3.6e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	572
AciI	CCGC	3 cut(s)	208, 504, 522
AclWI	GGATC	3 cut(s)	218, 351, 364
AfaI	GTAC	2 cut(s)	115, 233
AgsI	TTSAA	1 cut(s)	431
AjnI	CCWGG	4 cut(s)	14, 38, 116, 420
AluBI	AGCT	3 cut(s)	387, 556, 578
AluI	AGCT	3 cut(s)	387, 556, 578
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	2 cut(s)	22, 220
AlwI	GGATC	3 cut(s)	218, 351, 364
Ama87I	CYCGRG	1 cut(s)	285
Aor13HI	TCCGGA	1 cut(s)	572
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	74, 578
AseI	ATTAAT	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	2 cut(s)	468, 488
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	2 cut(s)	86, 565
BccI	CCATC	2 cut(s)	50, 527
BciT130I	CCWGG	4 cut(s)	16, 40, 118, 422
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	22, 220
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	2 cut(s)	166, 192
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	4 cut(s)	75, 505, 523, 579
BlpI	GCTNAGC	1 cut(s)	557
BlsI	GCNGC	4 cut(s)	76, 506, 524, 580
Bme1390I	CCNGG	5 cut(s)	16, 40, 79, 118, 422
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	3 cut(s)	185, 269, 358
BmrFI	CCNGG	5 cut(s)	16, 40, 79, 118, 422
BpiI	GAAGAC	2 cut(s)	468, 488
Bpu1102I	GCTNAGC	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	51, 492
BsaWI	WCCGGW	1 cut(s)	572
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bse8I	GATNNNNATC	1 cut(s)	146
BseAI	TCCGGA	1 cut(s)	572
BseBI	CCWGG	4 cut(s)	16, 40, 118, 422
BseDI	CCNNGG	2 cut(s)	51, 492
BseGI	GGATG	2 cut(s)	61, 322
BseJI	GATNNNNATC	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	571
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	2 cut(s)	86, 565
BshFI	GGCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	78, 573
BslFI	GGGAC	1 cut(s)	169
BsmAI	GTCTC	2 cut(s)	22, 220
BsmBI	CGTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	248
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp13I	TCCGGA	1 cut(s)	572
Bsp143I	GATC	6 cut(s)	157, 210, 240, 306, 356, 415
Bsp1720I	GCTNAGC	1 cut(s)	557
BspACI	CCGC	3 cut(s)	208, 504, 522
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	570
BspEI	TCCGGA	1 cut(s)	572
BspLI	GGNNCC	3 cut(s)	185, 269, 358
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	3 cut(s)	218, 351, 364
BspTNI	GGTCTC	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	51, 492
BssMI	GATC	6 cut(s)	157, 210, 240, 306, 356, 415
Bst2UI	CCWGG	4 cut(s)	16, 40, 118, 422
Bst4CI	ACNGT	5 cut(s)	193, 231, 394, 444, 458
Bst6I	CTCTTC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	1 cut(s)	557
BstF5I	GGATG	2 cut(s)	61, 322
BstKTI	GATC	6 cut(s)	160, 213, 243, 309, 359, 418
BstMAI	GTCTC	2 cut(s)	22, 220
BstMBI	GATC	6 cut(s)	157, 210, 240, 306, 356, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 205, 510, 519
BstNI	CCWGG	4 cut(s)	16, 40, 118, 422
BstSCI	CCNGG	5 cut(s)	14, 38, 77, 116, 420
BstSFI	CTRYAG	2 cut(s)	166, 192
BstV1I	GCAGC	2 cut(s)	86, 565
BstV2I	GAAGAC	2 cut(s)	468, 488
BstX2I	RGATCY	2 cut(s)	210, 356
BstXI	CCANNNNNNTGG	2 cut(s)	15, 39
BstYI	RGATCY	2 cut(s)	210, 356
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	61, 322
BtsIMutI	CAGTG	2 cut(s)	440, 463
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	183
CsiI	ACCWGGT	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	114, 232
CviAII	CATG	3 cut(s)	323, 451, 478
CviQI	GTAC	2 cut(s)	114, 232
DdeI	CTNAG	1 cut(s)	557
DpnI	GATC	6 cut(s)	159, 212, 242, 308, 358, 417
DpnII	GATC	6 cut(s)	157, 210, 240, 306, 356, 415
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Ecl136II	GAGCTC	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	558
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	556
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	4 cut(s)	14, 38, 116, 420
EcoT38I	GRGCYC	1 cut(s)	558
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	3 cut(s)	326, 454, 481
FaiI	YATR	9 cut(s)	12, 168, 279, 324, 332, 398, 452, 479, 510
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	3 cut(s)	322, 450, 477
Fnu4HI	GCNGC	4 cut(s)	75, 505, 523, 579
FokI	GGATG	2 cut(s)	68, 329
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	4 cut(s)	75, 505, 523, 579
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	4 cut(s)	75, 505, 523, 579
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	2 cut(s)	78, 573
Hin1II	CATG	3 cut(s)	326, 454, 481
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	2 cut(s)	124, 147
HpaII	CCGG	2 cut(s)	78, 573
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	123, 381
Hpy188I	TCNGA	4 cut(s)	108, 141, 316, 493
Hpy188III	TCNNGA	3 cut(s)	271, 287, 573
Hpy8I	GTNNAC	2 cut(s)	123, 381
HpyCH4III	ACNGT	5 cut(s)	193, 231, 394, 444, 458
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	102, 454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 205, 510, 519
HpyF3I	CTNAG	1 cut(s)	557
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	326, 454, 481
Kpn2I	TCCGGA	1 cut(s)	572
Kzo9I	GATC	6 cut(s)	157, 210, 240, 306, 356, 415
LmnI	GCTCC	2 cut(s)	108, 575
Lsp1109I	GCAGC	2 cut(s)	86, 565
MabI	ACCWGGT	1 cut(s)	116
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	1 cut(s)	93
MalI	GATC	6 cut(s)	159, 212, 242, 308, 358, 417
MboI	GATC	6 cut(s)	157, 210, 240, 306, 356, 415
MboII	GAAGA	7 cut(s)	310, 313, 316, 425, 428, 473, 493
MflI	RGATCY	2 cut(s)	210, 356
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	2 cut(s)	370, 589
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	8 cut(s)	46, 53, 161, 238, 401, 487, 491, 572
MroI	TCCGGA	1 cut(s)	572
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	2 cut(s)	363, 369
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	2 cut(s)	78, 573
MspR9I	CCNGG	5 cut(s)	16, 40, 79, 118, 422
MvaI	CCWGG	4 cut(s)	16, 40, 118, 422
MwoI	GCNNNNNNNGC	4 cut(s)	108, 205, 510, 519
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	6 cut(s)	157, 210, 240, 306, 356, 415
NlaIII	CATG	3 cut(s)	326, 454, 481
NlaIV	GGNNCC	3 cut(s)	185, 269, 358
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	147
PkrI	GCNGC	4 cut(s)	76, 506, 524, 580
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	183
Psp6I	CCWGG	4 cut(s)	14, 38, 116, 420
PspGI	CCWGG	4 cut(s)	14, 38, 116, 420
PspN4I	GGNNCC	3 cut(s)	185, 269, 358
PspPI	GGNCC	1 cut(s)	183
PspPPI	RGGWCCY	1 cut(s)	183
PsrI	GAACNNNNNNTAC	2 cut(s)	186, 218
PsuI	RGATCY	2 cut(s)	210, 356
RsaI	GTAC	2 cut(s)	115, 233
RsaNI	GTAC	2 cut(s)	114, 232
SacI	GAGCTC	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	363, 369
SatI	GCNGC	4 cut(s)	75, 505, 523, 579
Sau3AI	GATC	6 cut(s)	157, 210, 240, 306, 356, 415
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	5 cut(s)	16, 40, 79, 118, 422
SduI	GDGCHC	1 cut(s)	558
SexAI	ACCWGGT	1 cut(s)	116
SfcI	CTRYAG	2 cut(s)	166, 192
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	2 cut(s)	370, 589
SsiI	CCGC	3 cut(s)	208, 504, 522
SspMI	CTAG	1 cut(s)	384
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	5 cut(s)	14, 38, 77, 116, 420
TaaI	ACNGT	5 cut(s)	193, 231, 394, 444, 458
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	370, 589
TauI	GCSGC	2 cut(s)	507, 525
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	2 cut(s)	363, 369
Tru9I	TTAA	2 cut(s)	363, 369
TscAI	CASTG	2 cut(s)	447, 463
TseI	GCWGC	2 cut(s)	74, 578
TspDTI	ATGAA	3 cut(s)	209, 311, 494
TspGWI	ACGGA	2 cut(s)	249, 310
TspRI	CASTG	2 cut(s)	447, 463
VpaK11BI	GGWCC	1 cut(s)	183
VspI	ATTAAT	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.