RchiOBHm_Chr5g0035831

Phosphoenolpyruvate carboxylase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
29864650 .. 29865775
1126 bp
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UTR
Exon/CDS
Intron
PRQ31467

Sequence Viewer

Length: 441 bp
ATGTGGAAAATTGAAACGGGGCGTTTTTCTGTTAAGAGTGCTTGTAGTATGAGGATGGCGGGGATGGATGACATGGCGGAGCTGCTGGAGGCGTCAGAAATTTTGAAGATGAGCTTAGGGAAGGCACTCACTCTCGCTCGTGCTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGCTCATCACAGGGTTCGTAGACAAAAGAATGTGGCATCCCTATCAAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCGTGGTGTTTCCCCAGATCAGCTTTACGATACCATTTGCAATCAGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATTGTGGAACCTTACAATACAAACATATCAGACTTTCTGTGAGCGACTTTCTGCACATCCTACACAAATTAATTGTGACTTTGCTCAGTTTTTAG

Protein Analysis

146

Amino Acids

16.52

Weight (kDa)

8.4

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEPcase PF00311 31 - 127 3e-19 Phosphoenolpyruvate carboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 199
AciI CCGC 2 cut(s) 59, 77
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 92
AgsI TTSAA 2 cut(s) 14, 106
AluBI AGCT 5 cut(s) 82, 114, 182, 253, 283
AluI AGCT 5 cut(s) 82, 114, 182, 253, 283
AlwNI CAGNNNCTG 1 cut(s) 256
ApeKI GCWGC 2 cut(s) 82, 259
ApoI RAATTY 1 cut(s) 99
AseI ATTAAT 2 cut(s) 345, 416
BauI CACGAG 1 cut(s) 138
BbvI GCAGC 2 cut(s) 69, 271
BccI CCATC 3 cut(s) 49, 58, 160
BfmI CTRYAG 1 cut(s) 257
BisI GCNGC 2 cut(s) 83, 260
BlsI GCNGC 2 cut(s) 84, 261
BmiI GGNNCC 1 cut(s) 355
BmsI GCATC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 115
BsaHI GRCGYC 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 171
BseGI GGATG 6 cut(s) 60, 69, 73, 215, 331, 402
BseMI GCAATG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 69, 271
BsgI GTGCAG 2 cut(s) 312, 383
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 2 cut(s) 59, 77
BspLI GGNNCC 1 cut(s) 355
BspMAI CTGCAG 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 171
BssMI GATC 1 cut(s) 277
BssNI GRCGYC 1 cut(s) 92
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 115, 431
BstF5I GGATG 6 cut(s) 60, 69, 73, 215, 331, 402
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 69, 271
BtsCI GGATG 6 cut(s) 60, 69, 73, 215, 331, 402
CaiI CAGNNNCTG 1 cut(s) 256
CseI GACGC 1 cut(s) 81
CviAII CATG 1 cut(s) 73
CviJI RGCY 6 cut(s) 82, 114, 150, 182, 253, 283
CviKI_1 RGCY 6 cut(s) 82, 114, 150, 182, 253, 283
DdeI CTNAG 2 cut(s) 115, 431
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
EciI GGCGGA 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 198
FaeI CATG 1 cut(s) 76
FaiI YATR 3 cut(s) 50, 74, 372
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 1 cut(s) 72
FauI CCCGC 1 cut(s) 52
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 83, 260
FokI GGATG 6 cut(s) 67, 76, 80, 202, 318, 389
Fsp4HI GCNGC 2 cut(s) 83, 260
GluI GCNGC 2 cut(s) 83, 260
GsuI CTGGAG 1 cut(s) 107
HgaI GACGC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 97, 377
Hpy188III TCNNGA 2 cut(s) 305, 313
Hpy8I GTNNAC 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 115
HpyCH4V TGCA 4 cut(s) 259, 300, 329, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 2 cut(s) 115, 431
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 71, 175, 288, 290
Lsp1109I GCAGC 2 cut(s) 69, 271
LweI GCATC 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 421
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 1 cut(s) 118
MluCI AATT 7 cut(s) 9, 99, 160, 342, 346, 413, 417
MnlI CCTC 4 cut(s) 45, 82, 167, 301
MseI TTAA 4 cut(s) 33, 246, 345, 416
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeII GATC 1 cut(s) 277
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 421
PkrI GCNGC 2 cut(s) 84, 261
PshBI ATTAAT 2 cut(s) 345, 416
PspN4I GGNNCC 1 cut(s) 355
PstI CTGCAG 1 cut(s) 261
PstNI CAGNNNCTG 1 cut(s) 256
SaqAI TTAA 4 cut(s) 33, 246, 345, 416
SatI GCNGC 2 cut(s) 83, 260
Sau3AI GATC 1 cut(s) 277
SetI ASST 8 cut(s) 84, 116, 159, 184, 255, 285, 312, 359
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 257
Sse9I AATT 7 cut(s) 9, 99, 160, 342, 346, 413, 417
SsiI CCGC 2 cut(s) 59, 77
TaqI TCGA 1 cut(s) 312
TasI AATT 7 cut(s) 9, 99, 160, 342, 346, 413, 417
Tru1I TTAA 4 cut(s) 33, 246, 345, 416
Tru9I TTAA 4 cut(s) 33, 246, 345, 416
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 2 cut(s) 82, 259
Tsp45I GTSAC 1 cut(s) 421
VspI ATTAAT 2 cut(s) 345, 416
XapI RAATTY 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.