Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

11788927 .. 11790389

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G010750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGGACACGGTGGAGCTGCTGGAGAAGAAGCTACCGTCGGAAATTTCAAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCCTGTTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGGTCACTCAACCTTCTGCAGCGTGGTGTTTCCCCAAACCAGCTTTACGATACTGTTTGCAAGCAGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATCGCGGAACCTTACAATACAAACATATCAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCTGGTGCGACAGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAATTGATGAAGCTGGGGCAGGTTTGAACATTCCCTTTGGAAAGCTGTACCTCATTATTTATGTCATGTCAGCAATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

162

Amino Acids

18.56

Weight (kDa)

5.72

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	10 - 145	6.7e-26	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	390
AccII	CGCG	1 cut(s)	246
AciI	CCGC	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	45, 289
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	455
AgsI	TTSAA	3 cut(s)	51, 341, 433
AhlI	ACTAGT	1 cut(s)	314
AluBI	AGCT	7 cut(s)	19, 34, 60, 178, 385, 419, 451
AluI	AGCT	7 cut(s)	19, 34, 60, 178, 385, 419, 451
Alw26I	GTCTC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	19, 154
ApoI	RAATTY	2 cut(s)	45, 289
AseI	ATTAAT	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	6, 166
BccI	CCATC	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	291
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	416
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	2 cut(s)	20, 155
BlsI	GCNGC	2 cut(s)	21, 156
BmiI	GGNNCC	2 cut(s)	250, 392
BpiI	GAAGAC	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bse3DI	GCAATG	2 cut(s)	117, 486
BseGI	GGATG	1 cut(s)	226
BseMI	GCAATG	2 cut(s)	117, 486
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	6, 166
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	390
BsmAI	GTCTC	1 cut(s)	291
Bso31I	GGTCTC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	307, 343
BspACI	CCGC	1 cut(s)	246
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	250, 392
BspMAI	CTGCAG	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	390
BspTNI	GGTCTC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	117, 486
BssMI	GATC	2 cut(s)	307, 343
Bst4CI	ACNGT	3 cut(s)	13, 39, 190
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	61, 386
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	2 cut(s)	310, 346
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	2 cut(s)	307, 343
BstSFI	CTRYAG	1 cut(s)	152
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	6, 166
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	454
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	1 cut(s)	472
CviJI	RGCY	8 cut(s)	19, 34, 60, 96, 178, 385, 419, 451
CviKI_1	RGCY	8 cut(s)	19, 34, 60, 96, 178, 385, 419, 451
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	2 cut(s)	61, 386
DpnI	GATC	2 cut(s)	309, 345
DpnII	GATC	2 cut(s)	307, 343
DraI	TTTAAA	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	144
FaeI	CATG	1 cut(s)	475
FaiI	YATR	6 cut(s)	267, 332, 370, 396, 468, 473
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	20, 155
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	20, 155
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	2 cut(s)	20, 155
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	475
HphI	GGTGA	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	43, 272
Hpy188III	TCNNGA	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	3 cut(s)	13, 39, 190
HpyCH4V	TGCA	3 cut(s)	154, 195, 224
HpyF3I	CTNAG	2 cut(s)	61, 386
Hsp92II	CATG	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	307, 343
LmnI	GCTCC	2 cut(s)	16, 88
LpnPI	CCDG	9 cut(s)	8, 99, 121, 185, 188, 318, 332, 405, 411
Lsp1109I	GCAGC	2 cut(s)	6, 166
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	2 cut(s)	309, 345
MboI	GATC	2 cut(s)	307, 343
MboII	GAAGA	3 cut(s)	40, 332, 353
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	5 cut(s)	45, 106, 237, 289, 408
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	5 cut(s)	58, 61, 113, 196, 467
MseI	TTAA	4 cut(s)	240, 287, 293, 487
MunI	CAATTG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	246
NdeII	GATC	2 cut(s)	307, 343
NlaIII	CATG	1 cut(s)	475
NlaIV	GGNNCC	2 cut(s)	250, 392
NmuCI	GTSAC	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	21, 156
PshBI	ATTAAT	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	250, 392
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	4 cut(s)	240, 287, 293, 487
SatI	GCNGC	2 cut(s)	20, 155
Sau3AI	GATC	2 cut(s)	307, 343
SfcI	CTRYAG	1 cut(s)	152
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	5 cut(s)	45, 106, 237, 289, 408
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	13, 39, 190
TaqI	TCGA	1 cut(s)	207
TaqII	GACCGA	1 cut(s)	315
TasI	AATT	5 cut(s)	45, 106, 237, 289, 408
Tru1I	TTAA	4 cut(s)	240, 287, 293, 487
Tru9I	TTAA	4 cut(s)	240, 287, 293, 487
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	2 cut(s)	19, 154
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	119, 429
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	2 cut(s)	45, 289
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.