Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

53078473 .. 53081813

Gene Structure 3341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50672

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCAGAGTGCTTGTAGTATGAGGCTGGCAGGGATGGAGGACACGGCGGAGCTGCTGGAGAAGAAGCTAGCGTCGGAAATTTCGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCCTGTTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGGGTTTGTAGACCAAAAAATGTAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCGTGGTGTTTCCCCAAACCAGCTTTACGATACTGTTTGCAAGCAGGTTGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATCGCGGAACCTTACAATACAAACATATCAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCTGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGTTGATGAAGCTGGGGCAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTATGTCATGTCAACAATGCTTTAAAGAAGATTTGTCTTCAAATTCGTTTCTACACACTGGGAAACTGGAAAACCACTTCCATTGAAATGCACACCAATCAGGTTTGGCTCTTGGATGGGGGGTGGTCGAGATGGAAATCCCAATGTCACAGCAAACTGAGCAAAGGTCACAAAAGATGTCTCGCTTTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

247

Amino Acids

28.36

Weight (kDa)

8.46

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	17 - 196	1.4e-34	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	261, 491
AccB1I	GGYRCC	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	1 cut(s)	321
AciI	CCGC	2 cut(s)	47, 321
AcsI	RAATTY	3 cut(s)	78, 364, 591
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	1 cut(s)	540
AgsI	TTSAA	4 cut(s)	416, 508, 590, 635
AhlI	ACTAGT	1 cut(s)	389
AluBI	AGCT	8 cut(s)	52, 67, 93, 219, 249, 460, 494, 536
AluI	AGCT	8 cut(s)	52, 67, 93, 219, 249, 460, 494, 536
Alw26I	GTCTC	2 cut(s)	366, 734
AlwNI	CAGNNNCTG	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	52, 225
ApoI	RAATTY	3 cut(s)	78, 364, 591
AseI	ATTAAT	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	421
AsuII	TTCGAA	1 cut(s)	83
AsuNHI	GCTAGC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	465
BbsI	GAAGAC	2 cut(s)	402, 578
BbvI	GCAGC	2 cut(s)	39, 237
BccI	CCATC	4 cut(s)	28, 139, 659, 675
BceAI	ACGGC	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	366, 734
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	3 cut(s)	68, 390, 742
BfmI	CTRYAG	1 cut(s)	223
BfuAI	ACCTGC	2 cut(s)	261, 491
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	2 cut(s)	53, 226
BlsI	GCNGC	2 cut(s)	54, 227
BmiI	GGNNCC	2 cut(s)	325, 467
BmrI	ACTGGG	1 cut(s)	617
BmtI	GCTAGC	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	617
BpiI	GAAGAC	2 cut(s)	402, 578
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	461
Bpu14I	TTCGAA	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	685
BsaI	GGTCTC	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bse1I	ACTGG	3 cut(s)	482, 612, 620
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	685
BseGI	GGATG	3 cut(s)	39, 301, 670
BseJI	GATNNNNATC	1 cut(s)	685
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	3 cut(s)	482, 612, 620
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	39, 237
BseYI	CCCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	508
BsmAI	GTCTC	2 cut(s)	366, 734
BsmFI	GGGAC	1 cut(s)	508
Bso31I	GGTCTC	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	382, 418
BspACI	CCGC	2 cut(s)	47, 321
BspCNI	CTCAG	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	325, 467
BspMAI	CTGCAG	1 cut(s)	227
BspMI	ACCTGC	2 cut(s)	261, 491
BspOI	GCTAGC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	465
BspTNI	GGTCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	3 cut(s)	482, 612, 620
BssMI	GATC	2 cut(s)	382, 418
Bst4CI	ACNGT	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	27, 69, 268
BstDEI	CTNAG	3 cut(s)	94, 461, 707
BstF5I	GGATG	3 cut(s)	39, 301, 670
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	2 cut(s)	385, 421
BstMAI	GTCTC	2 cut(s)	366, 734
BstMBI	GATC	2 cut(s)	382, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 708
BstSFI	CTRYAG	1 cut(s)	223
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	39, 237
BstV2I	GAAGAC	2 cut(s)	402, 578
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	39, 301, 670
BtsIMutI	CAGTG	1 cut(s)	605
BveI	ACCTGC	2 cut(s)	261, 491
Cac8I	GCNNGC	3 cut(s)	27, 69, 268
CaiI	CAGNNNCTG	1 cut(s)	222
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	539
CspCI	CAANNNNNGTGG	4 cut(s)	466, 501, 613, 648
CviAII	CATG	1 cut(s)	557
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	3 cut(s)	94, 461, 707
DpnI	GATC	2 cut(s)	384, 420
DpnII	GATC	2 cut(s)	382, 418
DraI	TTTAAA	2 cut(s)	363, 573
EciI	GGCGGA	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	177
FaeI	CATG	1 cut(s)	560
FaiI	YATR	7 cut(s)	20, 342, 407, 445, 471, 553, 558
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	53, 226
FokI	GGATG	3 cut(s)	46, 288, 677
Fsp4HI	GCNGC	2 cut(s)	53, 226
FspBI	CTAG	3 cut(s)	68, 390, 742
GluI	GCNGC	2 cut(s)	53, 226
GsaI	CCCAGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	560
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	179, 562
Hpy188I	TCNGA	2 cut(s)	76, 347
Hpy188III	TCNNGA	2 cut(s)	283, 678
Hpy8I	GTNNAC	2 cut(s)	179, 562
Hpy99I	CGWCG	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	5 cut(s)	4, 225, 266, 299, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 708
HpyF3I	CTNAG	3 cut(s)	94, 461, 707
Hsp92II	CATG	1 cut(s)	560
Kzo9I	GATC	2 cut(s)	382, 418
LmnI	GCTCC	3 cut(s)	49, 121, 517
Lsp1109I	GCAGC	2 cut(s)	39, 237
MaeI	CTAG	3 cut(s)	68, 390, 742
MaeIII	GTNAC	2 cut(s)	695, 716
MalI	GATC	2 cut(s)	384, 420
MboI	GATC	2 cut(s)	382, 418
MboII	GAAGA	6 cut(s)	73, 97, 407, 428, 578, 589
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	5 cut(s)	78, 139, 312, 364, 591
MmeI	TCCRAC	2 cut(s)	54, 255
MnlI	CCTC	7 cut(s)	15, 31, 91, 94, 146, 271, 552
MseI	TTAA	5 cut(s)	212, 315, 362, 368, 572
MslI	CAYNNNNRTG	1 cut(s)	635
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	225, 708
NdeII	GATC	2 cut(s)	382, 418
NheI	GCTAGC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	560
NlaIV	GGNNCC	2 cut(s)	325, 467
NmuCI	GTSAC	2 cut(s)	695, 716
NspV	TTCGAA	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	54, 227
PshBI	ATTAAT	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	325, 467
PstI	CTGCAG	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	418
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
RseI	CAYNNNNRTG	1 cut(s)	635
SaqAI	TTAA	5 cut(s)	212, 315, 362, 368, 572
SatI	GCNGC	2 cut(s)	53, 226
Sau3AI	GATC	2 cut(s)	382, 418
SfcI	CTRYAG	1 cut(s)	223
SfuI	TTCGAA	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	635
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	5 cut(s)	78, 139, 312, 364, 591
SsiI	CCGC	2 cut(s)	47, 321
SspMI	CTAG	3 cut(s)	68, 390, 742
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	3 cut(s)	83, 282, 677
TaqII	GACCGA	1 cut(s)	390
TasI	AATT	5 cut(s)	78, 139, 312, 364, 591
Tru1I	TTAA	5 cut(s)	212, 315, 362, 368, 572
Tru9I	TTAA	5 cut(s)	212, 315, 362, 368, 572
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	2 cut(s)	695, 716
TseI	GCWGC	2 cut(s)	52, 225
Tsp45I	GTSAC	2 cut(s)	695, 716
TspDTI	ATGAA	2 cut(s)	152, 504
TspRI	CASTG	1 cut(s)	612
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	3 cut(s)	78, 364, 591
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	3 cut(s)	68, 390, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.