Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

29378552 .. 29383974

Gene Structure 5423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG272500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCAGAGTGCTTGTAGTATGAGGCTGGCGGGGATGGAGGACACGGCGGAGCTGCTGGAGAAAAAGCAAGCGTCGGAAATTTCGAAGATGAGCTTAGAGGAGGCACTCACTCTCACTCGTGCTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGTTCATCAATCATCACAGGTCACTGAACGACTTGGGAAAAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

68

Amino Acids

7.59

Weight (kDa)

6.72

Isoelectric Point (pI)

62.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	29, 47
AcsI	RAATTY	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	52, 93
AluI	AGCT	2 cut(s)	52, 93
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	78
AsuII	TTCGAA	1 cut(s)	83
BauI	CACGAG	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	2 cut(s)	28, 139
BceAI	ACGGC	1 cut(s)	60
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	77
Bpu14I	TTCGAA	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	39
Bsp119I	TTCGAA	1 cut(s)	83
BspACI	CCGC	2 cut(s)	29, 47
BspT104I	TTCGAA	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	27, 69
BstDEI	CTNAG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	27, 69
CseI	GACGC	1 cut(s)	60
CviJI	RGCY	4 cut(s)	25, 52, 93, 129
CviKI_1	RGCY	4 cut(s)	25, 52, 93, 129
DdeI	CTNAG	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	177
FaiI	YATR	1 cut(s)	20
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	3 cut(s)	11, 41, 161
Lsp1109I	GCAGC	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	97
MluCI	AATT	2 cut(s)	78, 139
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	15, 31, 91, 94, 146
NmuCI	GTSAC	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	54
SatI	GCNGC	1 cut(s)	53
SetI	ASST	4 cut(s)	54, 95, 138, 180
SfuI	TTCGAA	1 cut(s)	83
Sse9I	AATT	2 cut(s)	78, 139
SsiI	CCGC	2 cut(s)	29, 47
TaqI	TCGA	1 cut(s)	83
TasI	AATT	2 cut(s)	78, 139
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.