Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

29384892 .. 29385883

Gene Structure 992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGTTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGCTCATCACAGGGTTCGTAGACAAAAGAATGTGGCATCCCTATCAAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCGTTGTGTTTCCCCAGACCAGCTTTACGATACCATTTGCAAGCAAGAGGTTGAGATTGTTCTTACCGCACATCCTACACAAATTAATTGTGGAACCTTACAATACAAACATATCGGACTTTCTGTGAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

95

Amino Acids

10.73

Weight (kDa)

6.95

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	1 - 88	6.2e-17	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	91
AciI	CCGC	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	90
AluBI	AGCT	5 cut(s)	6, 74, 145, 175, 285
AluI	AGCT	5 cut(s)	6, 74, 145, 175, 285
AlwNI	CAGNNNCTG	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	151, 282
AseI	ATTAAT	1 cut(s)	237
BauI	CACGAG	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	286
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	2 cut(s)	152, 283
BlsI	GCNGC	2 cut(s)	153, 284
BmiI	GGNNCC	1 cut(s)	247
BmsI	GCATC	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	107, 223
BseMI	GCAATG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	163
BspACI	CCGC	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	107, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	107, 223
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	148
CviJI	RGCY	6 cut(s)	6, 42, 74, 145, 175, 285
CviKI_1	RGCY	6 cut(s)	6, 42, 74, 145, 175, 285
DdeI	CTNAG	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	90
FaiI	YATR	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	152, 283
FokI	GGATG	2 cut(s)	94, 210
Fsp4HI	GCNGC	2 cut(s)	152, 283
FspBI	CTAG	1 cut(s)	286
GluI	GCNGC	2 cut(s)	152, 283
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	151, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	7
LpnPI	CCDG	3 cut(s)	67, 180, 185
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	286
MluCI	AATT	3 cut(s)	52, 234, 238
MnlI	CCTC	4 cut(s)	4, 7, 59, 193
MseI	TTAA	2 cut(s)	138, 237
MwoI	GCNNNNNNNGC	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	153, 284
PshBI	ATTAAT	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	138, 237
SatI	GCNGC	2 cut(s)	152, 283
SetI	ASST	8 cut(s)	8, 51, 76, 147, 177, 204, 251, 287
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	149
SgeI	CNNG	9 cut(s)	38, 42, 44, 94, 135, 179, 184, 205, 209
Sse9I	AATT	3 cut(s)	52, 234, 238
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	1 cut(s)	286
TasI	AATT	3 cut(s)	52, 234, 238
Tru1I	TTAA	2 cut(s)	138, 237
Tru9I	TTAA	2 cut(s)	138, 237
TseI	GCWGC	2 cut(s)	151, 282
VspI	ATTAAT	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	91
XspI	CTAG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.