RLG00000023915

Phosphoenolpyruvate carboxylase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
29925481 .. 29927336
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023915

Sequence Viewer

Length: 396 bp
ATGGACCCAGATTTAAATGTTATAAGCATTTTAGTGAATATAGAGAAATTATTGAGTTGTGCAGGGTTCGTAGACAAAAGAATGTGGCATCCCTATCAAAATCTTGTGATGCGTGGTGTTTCCTCAGACCAGCTTTACGATACCATTTGCAAGCAGGTGCGAGAGATAACTTATATATGGCAGACAGATGAGCTTAGACACCATAAACCCACAGCAGTTGATGAAGCTAGGGTAGGTTTGAAAATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTACATCGTGTCAGCAATAAGGAAGCAAAATGTGGCATAACCATTCTGAGATCGAATAAAATTCAGAGAAGCTTATGCGGATCCCTGTACACCACTTATCATATGAGGCATTGA

Protein Analysis

132

Amino Acids

15.29

Weight (kDa)

9.12

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEPcase PF00311 53 - 102 7.7e-12 Phosphoenolpyruvate carboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 72
AciI CCGC 1 cut(s) 360
AclWI GGATC 2 cut(s) 357, 370
AcsI RAATTY 1 cut(s) 342
AfaI GTAC 2 cut(s) 273, 371
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 5 cut(s) 133, 193, 227, 269, 354
AluI AGCT 5 cut(s) 133, 193, 227, 269, 354
AlwI GGATC 2 cut(s) 357, 370
ApoI RAATTY 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 362
BfaI CTAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 364
BmsI GCATC 2 cut(s) 97, 99
BseGI GGATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 138, 320
BsgI GTGCAG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 2 cut(s) 332, 362
BspACI CCGC 1 cut(s) 360
BspCNI CTCAG 2 cut(s) 137, 321
BspLI GGNNCC 2 cut(s) 6, 364
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 2 cut(s) 357, 370
BsrGI TGTACA 1 cut(s) 369
BssMI GATC 2 cut(s) 332, 362
BstAUI TGTACA 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 124, 194, 329
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 2 cut(s) 335, 365
BstMBI GATC 2 cut(s) 332, 362
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BtsCI GGATG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 272, 370
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviJI RGCY 5 cut(s) 133, 193, 227, 269, 354
CviKI_1 RGCY 5 cut(s) 133, 193, 227, 269, 354
CviQI GTAC 2 cut(s) 272, 370
DdeI CTNAG 3 cut(s) 124, 194, 329
DpnI GATC 2 cut(s) 334, 364
DpnII GATC 2 cut(s) 332, 362
DraI TTTAAA 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 4
FaqI GGGAC 1 cut(s) 241
FauNDI CATATG 1 cut(s) 384
FblI GTMKAC 1 cut(s) 72
FokI GGATG 1 cut(s) 75
FspBI CTAG 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 352
Hpy166II GTNNAC 2 cut(s) 73, 372
Hpy188I TCNGA 3 cut(s) 127, 330, 348
Hpy8I GTNNAC 2 cut(s) 73, 372
HpyCH4V TGCA 2 cut(s) 62, 150
HpyF3I CTNAG 3 cut(s) 124, 194, 329
Kzo9I GATC 2 cut(s) 332, 362
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 5 cut(s) 21, 48, 140, 143, 380
LweI GCATC 2 cut(s) 97, 99
MaeI CTAG 1 cut(s) 228
MalI GATC 2 cut(s) 334, 364
MboI GATC 2 cut(s) 332, 362
MflI RGATCY 1 cut(s) 362
MluCI AATT 3 cut(s) 47, 243, 342
MnlI CCTC 3 cut(s) 133, 285, 381
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 32
NdeI CATATG 1 cut(s) 384
NdeII GATC 2 cut(s) 332, 362
NlaIV GGNNCC 2 cut(s) 6, 364
PaqCI CACCTGC 1 cut(s) 145
PsiI TTATAA 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 6, 364
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 362
RsaI GTAC 2 cut(s) 273, 371
RsaNI GTAC 2 cut(s) 272, 370
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 2 cut(s) 332, 362
Sau96I GGNCC 1 cut(s) 4
SetI ASST 8 cut(s) 135, 159, 195, 229, 238, 271, 277, 356
SfaNI GCATC 2 cut(s) 97, 99
SinI GGWCC 1 cut(s) 4
SmiI ATTTAAAT 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 3 cut(s) 47, 243, 342
SsiI CCGC 1 cut(s) 360
SspMI CTAG 1 cut(s) 228
SwaI ATTTAAAT 1 cut(s) 15
TaqI TCGA 1 cut(s) 335
TasI AATT 3 cut(s) 47, 243, 342
TatI WGTACW 1 cut(s) 369
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.