Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

44613613 .. 44615936

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009003

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGGAAAATTGAAACGGGGCATTTTTGTGTTCAGAGTGCTTGTAGTATGAGGCTGGAGGACACGATGGAGCTGCTGGAGAAGAAGCTAGCGTCGGATGAGCTTAGAGGAGGCACTCACTCTCGCTGGTGTTTTCAGCCATTACCTCAATTTGATGGGCCTTCTCAGCATGGTGTTTCCCCAGACCAGCTTTACGATACTGTTTCCAAGCAGGAGGTCGACATTGTTCTTACTGCACATCCTACACAAATTAATCGTGGAACCTTACAATACAAACATATCAGACTTTCTGTGAACCGACCTGATCTTACTAGTGAAGACAAAGATTTGATGAGCTTAGACACCATAAACCCACACCAGTTGATGAAGCTAGGGTTTGAATATTGTGGAGCAGCCCCTTTGGAAAGCTGTACCTCATTATTTACGTCGTGTCAGCAATGCTTTAAAGAAGCACACTGGGAAACTGGAAAACCACTTCCATTGAAATGCACACCAATCAGGTTTGGGTCTTGGATAGGGGTTGATCAAGATGGAAATCCCAATGTGACAGCAAAGGTCACAAAAGATGTCTCGCTTTTATCTAGGTGGATGACTATTGATCTCTATATTAGACAAGTGGATAGCCTGAAATTTGAACTATCCATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

217

Amino Acids

24.51

Weight (kDa)

5.97

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	55 - 97	3.6e-07	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	118 - 215	4.1e-19	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	629
AfaI	GTAC	1 cut(s)	412
AgsI	TTSAA	4 cut(s)	14, 380, 484, 635
AhlI	ACTAGT	1 cut(s)	311
AluBI	AGCT	7 cut(s)	73, 88, 103, 190, 336, 370, 408
AluI	AGCT	7 cut(s)	73, 88, 103, 190, 336, 370, 408
Alw26I	GTCTC	1 cut(s)	574
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	73, 392
ApoI	RAATTY	1 cut(s)	629
AseI	ATTAAT	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	158
AsuNHI	GCTAGC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	60, 404
BccI	CCATC	3 cut(s)	61, 149, 524
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	574
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	4 cut(s)	89, 312, 371, 582
BisI	GCNGC	2 cut(s)	74, 393
BlsI	GCNGC	2 cut(s)	75, 394
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	262
BmrI	ACTGGG	1 cut(s)	466
BmtI	GCTAGC	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	324
BpmI	CTGGAG	2 cut(s)	77, 98
BsaBI	GATNNNNATC	1 cut(s)	534
Bse1I	ACTGG	3 cut(s)	358, 461, 469
Bse3DI	GCAATG	1 cut(s)	443
Bse8I	GATNNNNATC	1 cut(s)	534
BseGI	GGATG	3 cut(s)	103, 238, 594
BseJI	GATNNNNATC	1 cut(s)	534
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	3 cut(s)	358, 461, 469
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	60, 404
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	304, 523, 598
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	262
BspOI	GCTAGC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	358, 461, 469
BssMI	GATC	3 cut(s)	304, 523, 598
Bst4CI	ACNGT	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	104, 165, 337
BstF5I	GGATG	3 cut(s)	103, 238, 594
BstKTI	GATC	3 cut(s)	307, 526, 601
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	3 cut(s)	304, 523, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	60, 404
BstV2I	GAAGAC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	103, 238, 594
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	411
CspCI	CAANNNNNGTGG	4 cut(s)	342, 377, 462, 497
CviAII	CATG	2 cut(s)	170, 643
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	3 cut(s)	104, 165, 337
DpnI	GATC	3 cut(s)	306, 525, 600
DpnII	GATC	3 cut(s)	304, 523, 598
DraI	TTTAAA	1 cut(s)	445
FaeI	CATG	2 cut(s)	173, 646
FaiI	YATR	6 cut(s)	50, 171, 279, 347, 606, 644
FatI	CATG	2 cut(s)	169, 642
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	74, 393
FokI	GGATG	3 cut(s)	110, 225, 601
Fsp4HI	GCNGC	2 cut(s)	74, 393
FspBI	CTAG	4 cut(s)	89, 312, 371, 582
GluI	GCNGC	2 cut(s)	74, 393
GsuI	CTGGAG	2 cut(s)	77, 98
HaeIII	GGCC	1 cut(s)	160
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	173, 646
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	220, 295
Hpy188I	TCNGA	3 cut(s)	36, 97, 284
Hpy188III	TCNNGA	1 cut(s)	527
Hpy8I	GTNNAC	2 cut(s)	220, 295
Hpy99I	CGWCG	2 cut(s)	97, 430
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	2 cut(s)	236, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	104, 165, 337
HpySE526I	ACGT	1 cut(s)	425
Hsp92II	CATG	2 cut(s)	173, 646
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	304, 523, 598
LmnI	GCTCC	2 cut(s)	70, 389
Lsp1109I	GCAGC	2 cut(s)	60, 404
MaeI	CTAG	4 cut(s)	89, 312, 371, 582
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	544, 556
MalI	GATC	3 cut(s)	306, 525, 600
MboI	GATC	3 cut(s)	304, 523, 598
MboII	GAAGA	2 cut(s)	94, 329
MluCI	AATT	5 cut(s)	9, 149, 249, 629, 646
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	7 cut(s)	45, 52, 101, 104, 156, 208, 424
MseI	TTAA	2 cut(s)	252, 444
MslI	CAYNNNNRTG	2 cut(s)	27, 484
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeII	GATC	3 cut(s)	304, 523, 598
NheI	GCTAGC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	173, 646
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	2 cut(s)	544, 556
PkrI	GCNGC	2 cut(s)	75, 394
PshBI	ATTAAT	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	158
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	2 cut(s)	27, 484
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	252, 444
SatI	GCNGC	2 cut(s)	74, 393
Sau3AI	GATC	3 cut(s)	304, 523, 598
Sau96I	GGNCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	27, 484
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	5 cut(s)	9, 149, 249, 629, 646
SspI	AATATT	1 cut(s)	383
SspMI	CTAG	4 cut(s)	89, 312, 371, 582
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	219
TasI	AATT	5 cut(s)	9, 149, 249, 629, 646
Tru1I	TTAA	2 cut(s)	252, 444
Tru9I	TTAA	2 cut(s)	252, 444
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	2 cut(s)	544, 556
TseI	GCWGC	2 cut(s)	73, 392
Tsp45I	GTSAC	2 cut(s)	544, 556
TspDTI	ATGAA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	461
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	4 cut(s)	89, 312, 371, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.