Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005795.1

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

27291 .. 29566

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005795.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgaggctggcagggatggaagacacggcggagctgctggagaagaagctagcgtcggaaatttcgaagatgagcttagaggaggcactcactctcgctcctgttttcagccattacctcaatttgatgggcattgctgaagttcatcacagggtttgtagacaaaagaatgtaaatcttctttacgatactgtttgcaagcaggaggtcgagattgttcttactgcacatcctacacaaattaatcgcggaaccttacaatacaaacatatcagactttctcatcttttaaatttaagagaccgacctgatcttactagtgaagacagagatatggtgattgaagatctggtgcgagagataacttctgtatggcaaacagatgagcttaggcaccataaacccacaccagttgatgaagctggggcaggtttgaacattgtggagcagtccctttggaaagctgtacctcattatttatgtcatttcagcaatgctttaaagaagatttgtcttcaaattcgtttctgcacactgggaaactggaaaaccacttccattgaaatgcacaccaatcaggtttggctcttggatggggggtggtcgagatggaaatcccaatgtcacaacaaaggtcacaaaagatgtctcgcttttatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

220

Amino Acids

25.44

Weight (kDa)

7.7

Isoelectric Point (pI)

60.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	419
AccB1I	GGYRCC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	1 cut(s)	249
AciI	CCGC	2 cut(s)	29, 249
AcsI	RAATTY	3 cut(s)	60, 292, 519
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	468
AgsI	TTSAA	4 cut(s)	344, 436, 518, 563
AhlI	ACTAGT	1 cut(s)	317
AluBI	AGCT	6 cut(s)	34, 49, 75, 388, 422, 464
AluI	AGCT	6 cut(s)	34, 49, 75, 388, 422, 464
Alw26I	GTCTC	2 cut(s)	294, 653
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	3 cut(s)	60, 292, 519
AseI	ATTAAT	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	349
AsuII	TTCGAA	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	393
BbsI	GAAGAC	3 cut(s)	27, 330, 506
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	4 cut(s)	10, 121, 587, 603
BceAI	ACGGC	1 cut(s)	42
BcoDI	GTCTC	2 cut(s)	294, 653
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	3 cut(s)	50, 318, 661
BfuAI	ACCTGC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	253, 395
BmrI	ACTGGG	1 cut(s)	545
BmtI	GCTAGC	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	545
BpiI	GAAGAC	3 cut(s)	27, 330, 506
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	613
BsaI	GGTCTC	1 cut(s)	294
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bse1I	ACTGG	3 cut(s)	410, 540, 548
Bse3DI	GCAATG	2 cut(s)	132, 499
Bse8I	GATNNNNATC	1 cut(s)	613
BseGI	GGATG	3 cut(s)	21, 229, 598
BseJI	GATNNNNATC	1 cut(s)	613
BseMI	GCAATG	2 cut(s)	132, 499
BseNI	ACTGG	3 cut(s)	410, 540, 548
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	2 cut(s)	210, 514
Bsh1236I	CGCG	1 cut(s)	249
BshNI	GGYRCC	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	436
BsmAI	GTCTC	2 cut(s)	294, 653
BsmFI	GGGAC	1 cut(s)	436
Bso31I	GGTCTC	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	310, 346
BspACI	CCGC	2 cut(s)	29, 249
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	253, 395
BspMI	ACCTGC	1 cut(s)	419
BspOI	GCTAGC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	393
BspTNI	GGTCTC	1 cut(s)	294
BsrDI	GCAATG	2 cut(s)	132, 499
BsrI	ACTGG	3 cut(s)	410, 540, 548
BssMI	GATC	2 cut(s)	310, 346
Bst4CI	ACNGT	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	9, 51, 200
BstDEI	CTNAG	2 cut(s)	76, 389
BstF5I	GGATG	3 cut(s)	21, 229, 598
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	2 cut(s)	313, 349
BstMAI	GTCTC	2 cut(s)	294, 653
BstMBI	GATC	2 cut(s)	310, 346
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	3 cut(s)	27, 330, 506
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BtsCI	GGATG	3 cut(s)	21, 229, 598
BtsIMutI	CAGTG	1 cut(s)	533
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	3 cut(s)	9, 51, 200
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	467
CspCI	CAANNNNNGTGG	4 cut(s)	394, 429, 541, 576
CviJI	RGCY	9 cut(s)	7, 34, 49, 75, 111, 388, 422, 464, 586
CviKI_1	RGCY	9 cut(s)	7, 34, 49, 75, 111, 388, 422, 464, 586
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	2 cut(s)	76, 389
DpnI	GATC	2 cut(s)	312, 348
DpnII	GATC	2 cut(s)	310, 346
DraI	TTTAAA	2 cut(s)	291, 501
EciI	GGCGGA	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	159
FaiI	YATR	5 cut(s)	270, 335, 373, 399, 481
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	3 cut(s)	28, 216, 605
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	3 cut(s)	50, 318, 661
GluI	GCNGC	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	58, 275
Hpy188III	TCNNGA	2 cut(s)	211, 606
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	4 cut(s)	198, 227, 531, 568
HpyF3I	CTNAG	2 cut(s)	76, 389
Kzo9I	GATC	2 cut(s)	310, 346
LmnI	GCTCC	3 cut(s)	31, 103, 445
Lsp1109I	GCAGC	1 cut(s)	21
MaeI	CTAG	3 cut(s)	50, 318, 661
MaeIII	GTNAC	2 cut(s)	623, 635
MalI	GATC	2 cut(s)	312, 348
MboI	GATC	2 cut(s)	310, 346
MboII	GAAGA	8 cut(s)	32, 55, 79, 170, 335, 356, 506, 517
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	5 cut(s)	60, 121, 240, 292, 519
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	5 cut(s)	73, 76, 128, 199, 480
MseI	TTAA	4 cut(s)	243, 290, 296, 500
MslI	CAYNNNNRTG	1 cut(s)	563
MvnI	CGCG	1 cut(s)	249
NdeII	GATC	2 cut(s)	310, 346
NheI	GCTAGC	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	253, 395
NmuCI	GTSAC	2 cut(s)	623, 635
NspV	TTCGAA	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	36
PshBI	ATTAAT	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	253, 395
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	1 cut(s)	563
SaqAI	TTAA	4 cut(s)	243, 290, 296, 500
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	310, 346
SfuI	TTCGAA	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	563
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	5 cut(s)	60, 121, 240, 292, 519
SsiI	CCGC	2 cut(s)	29, 249
SspMI	CTAG	3 cut(s)	50, 318, 661
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	3 cut(s)	65, 210, 605
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	5 cut(s)	60, 121, 240, 292, 519
Tru1I	TTAA	4 cut(s)	243, 290, 296, 500
Tru9I	TTAA	4 cut(s)	243, 290, 296, 500
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	2 cut(s)	623, 635
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	2 cut(s)	623, 635
TspDTI	ATGAA	2 cut(s)	134, 432
TspRI	CASTG	1 cut(s)	540
VspI	ATTAAT	1 cut(s)	243
XapI	RAATTY	3 cut(s)	60, 292, 519
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	3 cut(s)	50, 318, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.