Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

22111199 .. 22112707

Gene Structure 1509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAAGACACGGCGGAGCTGCTGGAGAAGAAGCTAGCGTCGGAAATTTCGAAGATGATCTTAGAGGAGGCACTCACTCTCGCTCCTGTTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCTGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGTTGATGAAGCTGGGGCAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTATGTCATTTCAGCAATGCTTTAAAGAAGATTTGTCTTCAAATTCGTTTCTGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

132

Amino Acids

15.33

Weight (kDa)

5.55

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	44 - 124	1.3e-17	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	255
AciI	CCGC	1 cut(s)	14
AcsI	RAATTY	3 cut(s)	45, 154, 381
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	330
AgsI	TTSAA	3 cut(s)	206, 298, 380
AhlI	ACTAGT	1 cut(s)	179
AluBI	AGCT	5 cut(s)	19, 34, 250, 284, 326
AluI	AGCT	5 cut(s)	19, 34, 250, 284, 326
Alw26I	GTCTC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	3 cut(s)	45, 154, 381
AsuHPI	GGTGA	1 cut(s)	211
AsuII	TTCGAA	1 cut(s)	50
AsuNHI	GCTAGC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	255
BbsI	GAAGAC	3 cut(s)	12, 192, 368
BbvI	GCAGC	1 cut(s)	6
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	156
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	35, 180
BfuAI	ACCTGC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	257
BmtI	GCTAGC	1 cut(s)	38
BpiI	GAAGAC	3 cut(s)	12, 192, 368
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	251
Bpu14I	TTCGAA	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	2 cut(s)	117, 361
BseMI	GCAATG	2 cut(s)	117, 361
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	6
BseYI	CCCAGC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	50
Bsp143I	GATC	3 cut(s)	57, 172, 208
BspACI	CCGC	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	257
BspMI	ACCTGC	1 cut(s)	281
BspOI	GCTAGC	1 cut(s)	38
BspT104I	TTCGAA	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	2 cut(s)	117, 361
BsrI	ACTGG	1 cut(s)	272
BssMI	GATC	3 cut(s)	57, 172, 208
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	61, 251
BstKTI	GATC	3 cut(s)	60, 175, 211
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	3 cut(s)	57, 172, 208
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	3 cut(s)	12, 192, 368
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	36
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	329
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviJI	RGCY	6 cut(s)	19, 34, 96, 250, 284, 326
CviKI_1	RGCY	6 cut(s)	19, 34, 96, 250, 284, 326
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	2 cut(s)	61, 251
DpnI	GATC	3 cut(s)	59, 174, 210
DpnII	GATC	3 cut(s)	57, 172, 208
DraI	TTTAAA	2 cut(s)	153, 363
EciI	GGCGGA	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	144
FaiI	YATR	4 cut(s)	197, 235, 261, 343
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	2 cut(s)	35, 180
GluI	GCNGC	1 cut(s)	20
GsaI	CCCAGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	27
HphI	GGTGA	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	61, 251
Kzo9I	GATC	3 cut(s)	57, 172, 208
LmnI	GCTCC	3 cut(s)	16, 88, 307
LpnPI	CCDG	8 cut(s)	8, 99, 183, 197, 270, 276, 285, 376
Lsp1109I	GCAGC	1 cut(s)	6
MaeI	CTAG	2 cut(s)	35, 180
MalI	GATC	3 cut(s)	59, 174, 210
MboI	GATC	3 cut(s)	57, 172, 208
MboII	GAAGA	7 cut(s)	17, 40, 64, 197, 218, 368, 379
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	4 cut(s)	45, 106, 154, 381
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	4 cut(s)	58, 61, 113, 342
MseI	TTAA	3 cut(s)	152, 158, 362
NdeII	GATC	3 cut(s)	57, 172, 208
NheI	GCTAGC	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	257
NspV	TTCGAA	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	152, 158, 362
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	57, 172, 208
SetI	ASST	9 cut(s)	21, 36, 105, 172, 252, 286, 295, 328, 334
SfuI	TTCGAA	1 cut(s)	50
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	4 cut(s)	45, 106, 154, 381
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	2 cut(s)	35, 180
TaqI	TCGA	1 cut(s)	50
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	4 cut(s)	45, 106, 154, 381
Tru1I	TTAA	3 cut(s)	152, 158, 362
Tru9I	TTAA	3 cut(s)	152, 158, 362
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	119, 294
XapI	RAATTY	3 cut(s)	45, 154, 381
XspI	CTAG	2 cut(s)	35, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.