Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

39279314 .. 39279556

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0334700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGCTGCGCAGGGTTTGGTGTCCGGGCTAATGGCGATCGGTGGTGCAGGTGGGGTACGTACCGGATCTGGATGGTGGGTTTGTGGATGGATCCACTCGGATCTCGTCGCAAATCCCGTGGAGATTGGTGGCTTGGTTTCGGATCAAGGAGCAGAGGGCGGCGGTGGAAGTTTCAGTGTTGGTTTCGCTCTCCAGGATGCGACCTCGAGGATTGGGGCGGAGCTAGTGGGAATCGTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

80

Amino Acids

7.8

Weight (kDa)

4.29

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	38
AbsI	CCTCGAGG	1 cut(s)	205
Acc16I	TGCGCA	1 cut(s)	9
Acc36I	ACCTGC	1 cut(s)	38
AciI	CCGC	3 cut(s)	159, 162, 218
AclWI	GGATC	5 cut(s)	73, 85, 98, 108, 150
AfaI	GTAC	2 cut(s)	57, 61
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
AlwI	GGATC	5 cut(s)	73, 85, 98, 108, 150
Ama87I	CYCGRG	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	90
BccI	CCATC	2 cut(s)	66, 81
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	25
BfaI	CTAG	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	6, 160
BlsI	GCNGC	2 cut(s)	7, 161
Bme1390I	CCNGG	2 cut(s)	25, 194
BmeT110I	CYCGRG	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	25, 194
BmsI	GCATC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	3 cut(s)	77, 92, 202
BsgI	GTGCAG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	24, 63
BsoBI	CYCGRG	1 cut(s)	205
Bsp143I	GATC	6 cut(s)	36, 65, 90, 100, 142, 237
BspACI	CCGC	3 cut(s)	159, 162, 218
BspLI	GGNNCC	1 cut(s)	92
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	5 cut(s)	73, 85, 98, 108, 150
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	6 cut(s)	36, 65, 90, 100, 142, 237
Bst2UI	CCWGG	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	3 cut(s)	77, 92, 202
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	6 cut(s)	39, 68, 93, 103, 145, 240
BstMBI	GATC	6 cut(s)	36, 65, 90, 100, 142, 237
BstMCI	CGRYCG	1 cut(s)	39
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	23, 192
BstSNI	TACGTA	1 cut(s)	59
BstX2I	RGATCY	3 cut(s)	65, 90, 100
BstYI	RGATCY	3 cut(s)	65, 90, 100
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	77, 92, 202
BtsIMutI	CAGTG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	38
CfoI	GCGC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	56, 60
CspCI	CAANNNNNGTGG	2 cut(s)	99, 134
CviJI	RGCY	4 cut(s)	5, 28, 132, 223
CviKI_1	RGCY	4 cut(s)	5, 28, 132, 223
CviQI	GTAC	2 cut(s)	56, 60
DpnI	GATC	6 cut(s)	38, 67, 92, 102, 144, 239
DpnII	GATC	6 cut(s)	36, 65, 90, 100, 142, 237
EciI	GGCGGA	1 cut(s)	233
Eco105I	TACGTA	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	6, 160
FokI	GGATG	3 cut(s)	84, 99, 209
Fsp4HI	GCNGC	2 cut(s)	6, 160
FspBI	CTAG	1 cut(s)	224
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	2 cut(s)	6, 160
GsuI	CTGGAG	1 cut(s)	176
HapII	CCGG	2 cut(s)	24, 63
HhaI	GCGC	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	2 cut(s)	24, 63
Hpy188I	TCNGA	3 cut(s)	100, 142, 242
Hpy188III	TCNNGA	2 cut(s)	69, 235
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	58
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	6 cut(s)	36, 65, 90, 100, 142, 237
LmnI	GCTCC	2 cut(s)	149, 220
LpnPI	CCDG	6 cut(s)	33, 37, 54, 76, 179, 206
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	58
MalI	GATC	6 cut(s)	38, 67, 92, 102, 144, 239
MboI	GATC	6 cut(s)	36, 65, 90, 100, 142, 237
MflI	RGATCY	3 cut(s)	65, 90, 100
MnlI	CCTC	3 cut(s)	148, 201, 214
MspI	CCGG	2 cut(s)	24, 63
MspR9I	CCNGG	2 cut(s)	25, 194
MvaI	CCWGG	1 cut(s)	194
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	6 cut(s)	36, 65, 90, 100, 142, 237
NlaIV	GGNNCC	1 cut(s)	92
NsbI	TGCGCA	1 cut(s)	9
PaeR7I	CTCGAG	1 cut(s)	205
PaqCI	CACCTGC	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	231
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	7, 161
Ple19I	CGATCG	1 cut(s)	39
Ppu21I	YACGTR	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	92
PspXI	VCTCGAGB	1 cut(s)	205
PsuI	RGATCY	3 cut(s)	65, 90, 100
PvuI	CGATCG	1 cut(s)	39
RsaI	GTAC	2 cut(s)	57, 61
RsaNI	GTAC	2 cut(s)	56, 60
SatI	GCNGC	2 cut(s)	6, 160
Sau3AI	GATC	6 cut(s)	36, 65, 90, 100, 142, 237
ScrFI	CCNGG	2 cut(s)	25, 194
SetI	ASST	4 cut(s)	52, 61, 206, 225
SfaNI	GCATC	1 cut(s)	187
Sfr274I	CTCGAG	1 cut(s)	205
SlaI	CTCGAG	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
SnaBI	TACGTA	1 cut(s)	59
SsiI	CCGC	3 cut(s)	159, 162, 218
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	23, 192
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	206
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	231
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	1 cut(s)	181
XhoI	CTCGAG	1 cut(s)	205
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.