Rroxscaffold_1G00028430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001048
Physical Location & Seq
Reverse (-)
36224452 .. 36227694
3243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028430.1

Sequence Viewer

Length: 231 bp
ATGGAAACCATAACAACTCTCATTGAGAAGGTGCGAGTGATAAGTTCTACATGGCAGACAGATGAGCTTAGGCGCCATAAACCCACACAAGTTAATGAAGCCGGGGTAGCACACCGAAAAAGCACTTTCACTGAAATGCACACCAATCAAGTTTGGGTCTTAGATGGGGGTGAATATTTTTGTACCAACTTGGGATTGGATTCCAATCAAGTAACTAAGTTCATGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.77

Weight (kDa)

6.25

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 1 cut(s) 184
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
AspLEI GCGC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 182
BanI GGYRCC 1 cut(s) 72
BccI CCATC 1 cut(s) 158
BcnI CCSGG 1 cut(s) 103
BfoI RGCGCY 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 102
BseJI GATNNNNATC 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 102
BssNI GRCGYC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 73
BstDEI CTNAG 3 cut(s) 68, 160, 216
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 129
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 183
CviAII CATG 2 cut(s) 51, 223
CviJI RGCY 2 cut(s) 67, 101
CviKI_1 RGCY 2 cut(s) 67, 101
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 3 cut(s) 68, 160, 216
DinI GGCGCC 1 cut(s) 74
EgeI GGCGCC 1 cut(s) 74
EheI GGCGCC 1 cut(s) 74
FaeI CATG 2 cut(s) 54, 226
FaiI YATR 4 cut(s) 11, 52, 78, 224
FatI CATG 2 cut(s) 50, 222
GlaI GCGC 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 76
HapII CCGG 1 cut(s) 102
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 2 cut(s) 54, 226
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 3 cut(s) 68, 160, 216
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 2 cut(s) 54, 226
HspAI GCGC 1 cut(s) 73
KasI GGCGCC 1 cut(s) 72
LpnPI CCDG 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 211
Mly113I GGCGCC 1 cut(s) 73
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 107
NarI GGCGCC 1 cut(s) 73
NciI CCSGG 1 cut(s) 103
NlaIII CATG 2 cut(s) 54, 226
NlaIV GGNNCC 1 cut(s) 74
PagI TCATGA 1 cut(s) 222
PfeI GAWTC 1 cut(s) 200
PluTI GGCGCC 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 74
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 103
SetI ASST 2 cut(s) 33, 69
SfoI GGCGCC 1 cut(s) 74
SgeI CNNG 8 cut(s) 47, 63, 101, 114, 115, 161, 202, 221
SmiMI CAYNNNNRTG 1 cut(s) 134
SspDI GGCGCC 1 cut(s) 72
SspI AATATT 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 101
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 111, 211
TspRI CASTG 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.