Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

29384891 .. 29389028

Gene Structure 4138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018408

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATCAGGTATGTCGAAAAGGAAGAGTCTGGAATGAACCAAAACATTTGTAGACCAACAGATGTCGTCTGCTTCTCAGTTACACTGACCGAGTCAACTCGCATAAGACAAGATAGATCAAACTGTAAAGAATGGCGTGAAATCCCTAATCAAATCATCTTCCTCACACCGCCAAATGGATGCAGTATGAGGCTGGCGGGGATGGAGGACACGGCGGAGCTGCTGGAGAAGAAGCAAGCGTCAAAAATTTCGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGCTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAATTCATCACAGGGTTGTTGCAGTAAGGATCAAAGAACTTGCAGTTTTATGTCAATCACTTAATCTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

133

Amino Acids

15.08

Weight (kDa)

7.65

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	75 - 120	6.5e-06	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	52
AciI	CCGC	3 cut(s)	170, 197, 215
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	2 cut(s)	246, 327
AcuI	CTGAAG	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	176
AluBI	AGCT	2 cut(s)	220, 261
AluI	AGCT	2 cut(s)	220, 261
AlwI	GGATC	1 cut(s)	362
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	2 cut(s)	246, 327
AsuII	TTCGAA	1 cut(s)	251
BauI	CACGAG	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	2 cut(s)	196, 307
BceAI	ACGGC	1 cut(s)	228
BclI	TGATCA	1 cut(s)	3
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmsI	GCATC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	185, 207
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	3, 116, 354
BspACI	CCGC	3 cut(s)	170, 197, 215
BspCNI	CTCAG	1 cut(s)	89
BspPI	GGATC	1 cut(s)	362
BspT104I	TTCGAA	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	318
BssMI	GATC	3 cut(s)	3, 116, 354
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	195, 237
BstDEI	CTNAG	2 cut(s)	76, 262
BstF5I	GGATG	2 cut(s)	185, 207
BstKTI	GATC	3 cut(s)	6, 119, 357
BstMBI	GATC	3 cut(s)	3, 116, 354
BstV1I	GCAGC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	185, 207
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	195, 237
CseI	GACGC	1 cut(s)	228
CviJI	RGCY	4 cut(s)	193, 220, 261, 297
CviKI_1	RGCY	4 cut(s)	193, 220, 261, 297
DdeI	CTNAG	2 cut(s)	76, 262
DpnI	GATC	3 cut(s)	5, 118, 356
DpnII	GATC	3 cut(s)	3, 116, 354
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	377
FaiI	YATR	4 cut(s)	12, 104, 188, 376
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FauI	CCCGC	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	2 cut(s)	192, 214
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	245
HgaI	GACGC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	26, 92
Hpy166II	GTNNAC	2 cut(s)	53, 96
Hpy188III	TCNNGA	1 cut(s)	30
Hpy8I	GTNNAC	2 cut(s)	53, 96
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	183, 347, 368
HpyF3I	CTNAG	2 cut(s)	76, 262
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 116, 354
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	4 cut(s)	15, 179, 209, 322
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	3 cut(s)	5, 118, 356
MboI	GATC	3 cut(s)	3, 116, 354
MboII	GAAGA	5 cut(s)	35, 151, 241, 265, 383
MluCI	AATT	3 cut(s)	246, 307, 327
MlyI	GAGTC	2 cut(s)	35, 101
MnlI	CCTC	6 cut(s)	173, 183, 199, 259, 262, 314
MseI	TTAA	1 cut(s)	387
NdeII	GATC	3 cut(s)	3, 116, 354
NspV	TTCGAA	1 cut(s)	251
PflFI	GACNNNGTC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	2 cut(s)	34, 100
PpsI	GAGTC	2 cut(s)	34, 100
PsyI	GACNNNGTC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	3 cut(s)	3, 116, 354
SchI	GAGTC	2 cut(s)	35, 101
SetI	ASST	4 cut(s)	11, 222, 263, 306
SfaNI	GCATC	1 cut(s)	170
SfuI	TTCGAA	1 cut(s)	251
Sse9I	AATT	3 cut(s)	246, 307, 327
SsiI	CCGC	3 cut(s)	170, 197, 215
TaaI	ACNGT	1 cut(s)	125
TaqI	TCGA	2 cut(s)	15, 251
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	246, 307, 327
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	50, 320
TspRI	CASTG	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	91
XapI	RAATTY	2 cut(s)	246, 327
XmiI	GTMKAC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.