Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

14724304 .. 14727777

Gene Structure 3474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG111600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGGGAGGAGTCTTGTTCAGCTTCTGCAGCGTGGTGTTTCCCCAGACCAGCTTTACGATACCGTTTGCAAGCAGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAAGCACCATAAACCCACACCAGTTGATGAAGCTAGGGCAGGTTTGAACATTGTAAAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTACGTCGTGTCAGCAATGCTTTAAAGAAGGACACTGGAAAACCACTTCCATTGAAATGCGCACCAATCAAGTTTGGGTCTTGTATGGGGGGTGATAGAGATGGAAATCCCAATGTGACAGCAAAGGTACTTGTGGGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

114

Amino Acids

12.64

Weight (kDa)

9.72

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	24 - 111	2.4e-29	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
Acc16I	TGCGCA	1 cut(s)	262
Acc36I	ACCTGC	2 cut(s)	64, 143
AfaI	GTAC	2 cut(s)	192, 330
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	160, 256
AluBI	AGCT	5 cut(s)	22, 52, 112, 146, 188
AluI	AGCT	5 cut(s)	22, 52, 112, 146, 188
AlwNI	CAGNNNCTG	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	26
BfrI	CTTAAG	1 cut(s)	113
BfuAI	ACCTGC	2 cut(s)	64, 143
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	134, 241
Bse3DI	GCAATG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	306
BseJI	GATNNNNATC	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	223
BseNI	ACTGG	2 cut(s)	134, 241
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	30
BspMI	ACCTGC	2 cut(s)	64, 143
BspTI	CTTAAG	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	134, 241
Bst4CI	ACNGT	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	263
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	2 cut(s)	64, 143
Cac8I	GCNNGC	1 cut(s)	71
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	191, 329
CspCI	CAANNNNNGTGG	4 cut(s)	118, 153, 234, 269
CviJI	RGCY	5 cut(s)	22, 52, 112, 146, 188
CviKI_1	RGCY	5 cut(s)	22, 52, 112, 146, 188
CviQI	GTAC	2 cut(s)	191, 329
DraI	TTTAAA	1 cut(s)	225
FaiI	YATR	3 cut(s)	97, 123, 287
FaqI	GGGAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	29
FspAI	RTGCGCAY	1 cut(s)	262
FspBI	CTAG	1 cut(s)	147
FspI	TGCGCA	1 cut(s)	262
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	1 cut(s)	10
HphI	GGTGA	1 cut(s)	305
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	28, 69
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	205
HspAI	GCGC	1 cut(s)	261
LpnPI	CCDG	6 cut(s)	57, 59, 62, 138, 147, 222
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	1 cut(s)	204
MseI	TTAA	2 cut(s)	114, 224
MslI	CAYNNNNRTG	1 cut(s)	256
MspCI	CTTAAG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	316
NsbI	TGCGCA	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PstI	CTGCAG	1 cut(s)	30
PstNI	CAGNNNCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	192, 330
RsaNI	GTAC	2 cut(s)	191, 329
RseI	CAYNNNNRTG	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	114, 224
SatI	GCNGC	1 cut(s)	29
SchI	GAGTC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SspMI	CTAG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	114, 224
Tru9I	TTAA	2 cut(s)	114, 224
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	241
Vha464I	CTTAAG	1 cut(s)	113
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.