Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

14234018 .. 14237709

Gene Structure 3692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGGACACGGCGGAGCTGCTGGAGAAGAAGCTAGCGTCGGAAATTTCGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCCTGTTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAACTTCTGCAGCGTGGTGTTTCCCCAGACCAGCTTTACGATACTGTTTGCAAGCAGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATCGCGGGACTTTACGATACAAATATATCAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCTGATGAGCTTAGGCACCATAAACCCACACCAGTTGATGAAGCTGGGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTATGTCATCTCAGCAATGCTTTAAAGAAGCACACTGGGAAACTGGAAAACCACTTCCATTGAAATGCACACCAATCAGGTTTGGCTCTTGGATGGGGGGTGGTCGAGATGGAAATTCCAATGTGACAGCAAAGGTCACAAAAGATGTCTCGCTTTTATCTAGGTGGATGACTATTGATCTCTATATTAGAGAAGTGGATAGCCTGAAATTTGAACTATCCATGAATTGGTGCAGTAATAGCTTGTCAAAACTGGCACAAGAGATTCTAGAGCACAAATCTGCATCTGAGGATCACCAGAGTTGGGATCATCAGTGTTATAATAGGAATCAGGAATCTGGTAGACATGCTGAAACACTTGATGCAATTACCAAATATTTGGATATGGGCACATACAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGTTCAAAGGAAAAAGACCGCTAGTCCCATCTAGCATGGAGGTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

301

Amino Acids

34.48

Weight (kDa)

5.53

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	41 - 236	2.9e-33	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	250 - 300	1.7e-10	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
AccB1I	GGYRCC	1 cut(s)	338
AccB7I	CCANNNNNTGG	1 cut(s)	645
AccI	GTMKAC	1 cut(s)	760
AccII	CGCG	1 cut(s)	225
AciI	CCGC	3 cut(s)	14, 225, 875
AclWI	GGATC	2 cut(s)	717, 732
AcsI	RAATTY	5 cut(s)	45, 268, 532, 626, 842
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	645, 721
AgsI	TTSAA	5 cut(s)	320, 377, 481, 632, 862
AhdI	GACNNNNNGTC	1 cut(s)	878
AhlI	ACTAGT	1 cut(s)	293
AluBI	AGCT	8 cut(s)	19, 34, 60, 157, 333, 367, 405, 660
AluI	AGCT	8 cut(s)	19, 34, 60, 157, 333, 367, 405, 660
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	2 cut(s)	270, 571
AlwI	GGATC	2 cut(s)	717, 732
ApeKI	GCWGC	2 cut(s)	19, 133
ApoI	RAATTY	5 cut(s)	45, 268, 532, 626, 842
AseI	ATTAAT	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	325, 704
AsuII	TTCGAA	1 cut(s)	50
AsuNHI	GCTAGC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	809
BanI	GGYRCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	6, 145
BccI	CCATC	4 cut(s)	106, 505, 521, 892
BceAI	ACGGC	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	270, 571
BcuI	ACTAGT	1 cut(s)	293
BfaI	CTAG	6 cut(s)	35, 294, 579, 686, 878, 888
BfmI	CTRYAG	1 cut(s)	131
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	2 cut(s)	20, 134
BlsI	GCNGC	2 cut(s)	21, 135
BmeRI	GACNNNNNGTC	1 cut(s)	878
BmiI	GGNNCC	1 cut(s)	340
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	2 cut(s)	710, 769
BmtI	GCTAGC	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	334
Bpu14I	TTCGAA	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	270
BsaXI	ACNNNNNCTCC	3 cut(s)	67, 97, 887
Bsc4I	CCNNNNNNNGG	2 cut(s)	645, 721
Bse1I	ACTGG	5 cut(s)	355, 458, 466, 675, 843
Bse3DI	GCAATG	2 cut(s)	117, 440
BseGI	GGATG	4 cut(s)	205, 516, 591, 829
BseLI	CCNNNNNNNGG	2 cut(s)	645, 721
BseMI	GCAATG	2 cut(s)	117, 440
BseMII	CTCAG	2 cut(s)	443, 696
BseNI	ACTGG	5 cut(s)	355, 458, 466, 675, 843
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	809
BseXI	GCAGC	2 cut(s)	6, 145
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	2 cut(s)	186, 670
Bsh1236I	CGCG	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	693
BslFI	GGGAC	3 cut(s)	241, 377, 866
BslI	CCNNNNNNNGG	2 cut(s)	645, 721
BsmAI	GTCTC	2 cut(s)	270, 571
BsmFI	GGGAC	3 cut(s)	241, 377, 866
Bso31I	GGTCTC	1 cut(s)	270
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	693, 809
Bsp143I	GATC	5 cut(s)	286, 322, 595, 709, 724
BspACI	CCGC	3 cut(s)	14, 225, 875
BspCNI	CTCAG	2 cut(s)	442, 697
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	135
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	717, 732
BspT104I	TTCGAA	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	270
BsrDI	GCAATG	2 cut(s)	117, 440
BsrI	ACTGG	5 cut(s)	355, 458, 466, 675, 843
BssMI	GATC	5 cut(s)	286, 322, 595, 709, 724
Bst4CI	ACNGT	2 cut(s)	169, 815
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	36, 176
BstDEI	CTNAG	4 cut(s)	61, 334, 429, 705
BstF5I	GGATG	4 cut(s)	205, 516, 591, 829
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	5 cut(s)	289, 325, 598, 712, 727
BstMAI	GTCTC	2 cut(s)	270, 571
BstMBI	GATC	5 cut(s)	286, 322, 595, 709, 724
BstMWI	GCNNNNNNNGC	1 cut(s)	657
BstNSI	RCATGY	1 cut(s)	767
BstSFI	CTRYAG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	809
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	6, 145
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	322
BstXI	CCANNNNNNTGG	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	322
BtsCI	GGATG	4 cut(s)	205, 516, 591, 829
BtsIMutI	CAGTG	3 cut(s)	451, 737, 820
Cac8I	GCNNGC	2 cut(s)	36, 176
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	408
CspCI	CAANNNNNGTGG	4 cut(s)	339, 374, 459, 494
CviAII	CATG	3 cut(s)	640, 764, 892
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	4 cut(s)	61, 334, 429, 705
DpnI	GATC	5 cut(s)	288, 324, 597, 711, 726
DpnII	GATC	5 cut(s)	286, 322, 595, 709, 724
DraI	TTTAAA	2 cut(s)	267, 442
DriI	GACNNNNNGTC	1 cut(s)	878
Eam1105I	GACNNNNNGTC	1 cut(s)	878
EciI	GGCGGA	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	270
FaeI	CATG	3 cut(s)	643, 767, 895
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	3 cut(s)	241, 377, 866
FatI	CATG	3 cut(s)	639, 763, 891
FauI	CCCGC	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	760
Fnu4HI	GCNGC	2 cut(s)	20, 134
FokI	GGATG	4 cut(s)	192, 523, 598, 836
Fsp4HI	GCNGC	2 cut(s)	20, 134
FspBI	CTAG	6 cut(s)	35, 294, 579, 686, 878, 888
GluI	GCNGC	2 cut(s)	20, 134
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	643, 767, 895
HinfI	GANTC	3 cut(s)	682, 745, 752
HphI	GGTGA	2 cut(s)	325, 704
Hpy166II	GTNNAC	1 cut(s)	761
Hpy188I	TCNGA	4 cut(s)	43, 251, 327, 706
Hpy188III	TCNNGA	4 cut(s)	187, 524, 686, 749
Hpy8I	GTNNAC	1 cut(s)	761
Hpy99I	CGWCG	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	169, 815
HpyCH4V	TGCA	7 cut(s)	133, 174, 203, 486, 651, 701, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	657
HpyF3I	CTNAG	4 cut(s)	61, 334, 429, 705
Hsp92II	CATG	3 cut(s)	643, 767, 895
Kzo9I	GATC	5 cut(s)	286, 322, 595, 709, 724
LmnI	GCTCC	3 cut(s)	16, 88, 386
Lsp1109I	GCAGC	2 cut(s)	6, 145
LweI	GCATC	2 cut(s)	710, 769
MaeI	CTAG	6 cut(s)	35, 294, 579, 686, 878, 888
MaeIII	GTNAC	2 cut(s)	541, 553
MalI	GATC	5 cut(s)	288, 324, 597, 711, 726
MboI	GATC	5 cut(s)	286, 322, 595, 709, 724
MboII	GAAGA	5 cut(s)	40, 64, 311, 332, 839
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	693, 809
MluCI	AATT	9 cut(s)	45, 106, 216, 268, 532, 626, 643, 783, 842
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	7 cut(s)	58, 61, 113, 175, 421, 700, 889
MseI	TTAA	4 cut(s)	219, 266, 272, 441
MslI	CAYNNNNRTG	1 cut(s)	481
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	657
NdeII	GATC	5 cut(s)	286, 322, 595, 709, 724
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	643, 767, 895
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	541, 553
NspI	RCATGY	1 cut(s)	767
NspV	TTCGAA	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	682, 745, 752
PflMI	CCANNNNNTGG	1 cut(s)	645
PkrI	GCNGC	2 cut(s)	21, 135
PshBI	ATTAAT	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	738
PspFI	CCCAGC	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	340
PstI	CTGCAG	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	481
SaqAI	TTAA	4 cut(s)	219, 266, 272, 441
SatI	GCNGC	2 cut(s)	20, 134
Sau3AI	GATC	5 cut(s)	286, 322, 595, 709, 724
SduI	GDGCHC	2 cut(s)	693, 809
SfaNI	GCATC	2 cut(s)	710, 769
SfcI	CTRYAG	1 cut(s)	131
SfuI	TTCGAA	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	481
SpeI	ACTAGT	1 cut(s)	293
Sse9I	AATT	9 cut(s)	45, 106, 216, 268, 532, 626, 643, 783, 842
SsiI	CCGC	3 cut(s)	14, 225, 875
SspI	AATATT	1 cut(s)	794
SspMI	CTAG	6 cut(s)	35, 294, 579, 686, 878, 888
TaaI	ACNGT	2 cut(s)	169, 815
TaqI	TCGA	3 cut(s)	50, 186, 523
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	9 cut(s)	45, 106, 216, 268, 532, 626, 643, 783, 842
TfiI	GAWTC	3 cut(s)	682, 745, 752
Tru1I	TTAA	4 cut(s)	219, 266, 272, 441
Tru9I	TTAA	4 cut(s)	219, 266, 272, 441
TscAI	CASTG	3 cut(s)	458, 737, 820
TseFI	GTSAC	2 cut(s)	541, 553
TseI	GCWGC	2 cut(s)	19, 133
Tsp45I	GTSAC	2 cut(s)	541, 553
TspDTI	ATGAA	3 cut(s)	377, 656, 840
TspRI	CASTG	3 cut(s)	458, 737, 820
Van91I	CCANNNNNTGG	1 cut(s)	645
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	5 cut(s)	45, 268, 532, 626, 842
XbaI	TCTAGA	1 cut(s)	685
XceI	RCATGY	1 cut(s)	767
XmiI	GTMKAC	1 cut(s)	760
XspI	CTAG	6 cut(s)	35, 294, 579, 686, 878, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.