Rw3G012340

Phosphoenolpyruvate carboxylase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
12158344 .. 12159327
984 bp
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UTR
Exon/CDS
Intron
Rw3G012340.1

Sequence Viewer

Length: 306 bp
ATGCAGAGTGCTTGTAGTATGAGGCTAGCGGGGATGGAGGACACGGCGGAGCTGCTGGAGAAGAAGCAAGCGTCGGAAATTTCGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGCTTTCAGCCATTACCTCAATTTGATGGGCGTTGCTGAAGTTCATCACAGGTCACTGAACGGCTTGGGAAAAAAAAAAATTGGGTTAAATTTCATATATCTCTTAGTGACATATTTTACAACCAATCGACTCTTGCTTGCTTCATCATCAGTAGTAGCAACTCTTAATCCCCAATCTATGAATTAA

Protein Analysis

101

Amino Acids

11.15

Weight (kDa)

8.85

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 47
AcsI RAATTY 2 cut(s) 78, 208
AcuI CTGAAG 1 cut(s) 177
AluBI AGCT 2 cut(s) 52, 93
AluI AGCT 2 cut(s) 52, 93
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 2 cut(s) 78, 208
AsuII TTCGAA 1 cut(s) 83
AsuNHI GCTAGC 1 cut(s) 25
BauI CACGAG 1 cut(s) 117
BbvI GCAGC 1 cut(s) 39
BccI CCATC 2 cut(s) 28, 139
BceAI ACGGC 2 cut(s) 60, 196
BfaI CTAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmtI GCTAGC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 77
Bpu14I TTCGAA 1 cut(s) 83
BseGI GGATG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 39
Bsp119I TTCGAA 1 cut(s) 83
BspACI CCGC 2 cut(s) 29, 47
BspOI GCTAGC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 83
BssSI CACGAG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 117
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 27, 69, 258
BstDEI CTNAG 2 cut(s) 94, 223
BstF5I GGATG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 3 cut(s) 27, 69, 258
CseI GACGC 1 cut(s) 60
CviJI RGCY 5 cut(s) 25, 52, 93, 129, 183
CviKI_1 RGCY 5 cut(s) 25, 52, 93, 129, 183
DdeI CTNAG 2 cut(s) 94, 223
EciI GGCGGA 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 177
FaiI YATR 5 cut(s) 20, 215, 217, 232, 299
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 77
HgaI GACGC 1 cut(s) 60
HinfI GANTC 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 94, 223
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 2 cut(s) 41, 154
Lsp1109I GCAGC 1 cut(s) 39
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 171, 226
MboII GAAGA 2 cut(s) 73, 97
MluCI AATT 5 cut(s) 78, 139, 198, 208, 301
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 5 cut(s) 15, 31, 91, 94, 146
MseI TTAA 3 cut(s) 206, 285, 304
NheI GCTAGC 1 cut(s) 25
NmuCI GTSAC 2 cut(s) 171, 226
NspV TTCGAA 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
SaqAI TTAA 3 cut(s) 206, 285, 304
SatI GCNGC 1 cut(s) 53
SchI GAGTC 1 cut(s) 243
SetI ASST 4 cut(s) 54, 95, 138, 173
SfuI TTCGAA 1 cut(s) 83
Sse9I AATT 5 cut(s) 78, 139, 198, 208, 301
SsiI CCGC 2 cut(s) 29, 47
SspMI CTAG 1 cut(s) 26
TaqI TCGA 2 cut(s) 83, 247
TasI AATT 5 cut(s) 78, 139, 198, 208, 301
Tru1I TTAA 3 cut(s) 206, 285, 304
Tru9I TTAA 3 cut(s) 206, 285, 304
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 2 cut(s) 171, 226
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 2 cut(s) 171, 226
TspDTI ATGAA 3 cut(s) 152, 202, 252
TspRI CASTG 1 cut(s) 180
XapI RAATTY 2 cut(s) 78, 208
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.