Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

30760773 .. 30762099

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGCTTAGAGGAGGCACTCACTCTAGCTCATGCTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGCTCATCACAGGGTTTGTAGACAAAAGAATGTGGCATCCCTATCAAAATCTTGTGATGATATTTTTAATCAGTTTCTGCAGCGTTGTGTTTCCCCAGACCAGCTTTACAATACCATTTGCAAGCAGGATCTTTTAAATTTAAGAGATCGACCTGATCTTACTAGTGAAGACAGAGACATGGTGATTGAAGATCTGGTGCGAGAGATACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGGTGATGAAGCTAGGGCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

116

Amino Acids

13.3

Weight (kDa)

5.9

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	1 - 67	4.2e-06	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	91
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	260
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	6 cut(s)	6, 29, 74, 175, 303, 337
AluI	AGCT	6 cut(s)	6, 29, 74, 175, 303, 337
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	207
AlwNI	CAGNNNCTG	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	265, 340
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
BanI	GGYRCC	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	240
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	3 cut(s)	26, 234, 338
BfmI	CTRYAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	163
BshNI	GGYRCC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	240
Bsp143I	GATC	4 cut(s)	199, 217, 226, 262
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	63
BssMI	GATC	4 cut(s)	199, 217, 226, 262
Bst2UI	CCWGG	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	7, 304
BstF5I	GGATG	1 cut(s)	107
BstKTI	GATC	4 cut(s)	202, 220, 229, 265
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	4 cut(s)	199, 217, 226, 262
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	2 cut(s)	199, 262
BstYI	RGATCY	2 cut(s)	199, 262
BtsCI	GGATG	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	148
CsiI	ACCWGGT	1 cut(s)	324
CviAII	CATG	2 cut(s)	32, 250
CviJI	RGCY	7 cut(s)	6, 29, 42, 74, 175, 303, 337
CviKI_1	RGCY	7 cut(s)	6, 29, 42, 74, 175, 303, 337
DdeI	CTNAG	2 cut(s)	7, 304
DpnI	GATC	4 cut(s)	201, 219, 228, 264
DpnII	GATC	4 cut(s)	199, 217, 226, 262
DraI	TTTAAA	1 cut(s)	207
DraIII	CACNNNGTG	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	35, 253
FaiI	YATR	4 cut(s)	33, 251, 288, 314
FatI	CATG	2 cut(s)	31, 249
FblI	GTMKAC	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	3 cut(s)	26, 234, 338
GluI	GCNGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	35, 253
HphI	GGTGA	2 cut(s)	265, 340
Hpy166II	GTNNAC	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	151, 192
HpyF3I	CTNAG	2 cut(s)	7, 304
Hsp92II	CATG	2 cut(s)	35, 253
Kzo9I	GATC	4 cut(s)	199, 217, 226, 262
LpnPI	CCDG	9 cut(s)	67, 180, 182, 185, 237, 251, 311, 329, 338
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	116
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	3 cut(s)	26, 234, 338
MalI	GATC	4 cut(s)	201, 219, 228, 264
MboI	GATC	4 cut(s)	199, 217, 226, 262
MboII	GAAGA	2 cut(s)	251, 272
MflI	RGATCY	2 cut(s)	199, 262
MluCI	AATT	2 cut(s)	52, 208
MnlI	CCTC	3 cut(s)	4, 7, 59
MseI	TTAA	3 cut(s)	138, 206, 212
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
NdeII	GATC	4 cut(s)	199, 217, 226, 262
NlaIII	CATG	2 cut(s)	35, 253
NlaIV	GGNNCC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	199, 262
SaqAI	TTAA	3 cut(s)	138, 206, 212
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	4 cut(s)	199, 217, 226, 262
ScrFI	CCNGG	1 cut(s)	326
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	2 cut(s)	52, 208
SspMI	CTAG	3 cut(s)	26, 234, 338
StyD4I	CCNGG	1 cut(s)	324
TaqI	TCGA	1 cut(s)	220
TasI	AATT	2 cut(s)	52, 208
Tru1I	TTAA	3 cut(s)	138, 206, 212
Tru9I	TTAA	3 cut(s)	138, 206, 212
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	347
XapI	RAATTY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	91
XspI	CTAG	3 cut(s)	26, 234, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.