Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

20089405 .. 20091904

Gene Structure 2500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55955

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTGATTGAAGATCTGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCCTAGGCACCATAAACCCACACCAGTTGATGAAGCCAGGGCAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTACATTGTGTCAGCAATGCTTTAAAGAAGGTTTCACACTGGGAAACCGGAAAATCACTTCGGTTGAAATGCACACCAATCAGGTTTGGGTCTTGGATGCGGGGTGATCAAGATGGAAATCTCAATGTGACAGCAAATGTCACAAAAGATGTCTCGCTTTTATCTAGGTGGATGACTATTGATCTCTATATTAGAGAAGTGGATAGCCTGAAATTTGAACTATCCATGAATTGGTGCAGCGATAGCTTGTCAAAACTGGCACAAGAGATTCTAGAGCACGGTATGACATATTGCAGTTATTTTCAGTGGTCATTAATTTTGGCTGCTTGGTATCATGTGGAGACTACCAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

166

Amino Acids

19.22

Weight (kDa)

6.37

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	3 - 137	1.1e-35	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	375
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	356
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	4 cut(s)	11, 103, 211, 362
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	2 cut(s)	131, 390
AluI	AGCT	2 cut(s)	131, 390
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	2 cut(s)	301, 479
ApeKI	GCWGC	2 cut(s)	381, 467
ApoI	RAATTY	1 cut(s)	356
AseI	ATTAAT	1 cut(s)	458
AspA2I	CCTAGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	16, 260
AvrII	CCTAGG	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	393, 454
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	91
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	301, 479
BfaI	CTAG	3 cut(s)	57, 309, 416
BfuAI	ACCTGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	2 cut(s)	382, 468
BlnI	CCTAGG	1 cut(s)	56
BlsI	GCNGC	2 cut(s)	383, 469
Bme1390I	CCNGG	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	56, 90
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	3 cut(s)	77, 188, 405
Bse3DI	GCAATG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	56, 90
BseGI	GGATG	2 cut(s)	246, 321
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	166
BseNI	ACTGG	3 cut(s)	77, 188, 405
BseXI	GCAGC	2 cut(s)	393, 454
BsgI	GTGCAG	1 cut(s)	400
BshNI	GGYRCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	2 cut(s)	301, 479
BsmFI	GGGAC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	13, 250, 325
BspACI	CCGC	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	62
BspMI	ACCTGC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	166
BsrI	ACTGG	3 cut(s)	77, 188, 405
BssECI	CCNNGG	2 cut(s)	56, 90
BssMI	GATC	3 cut(s)	13, 250, 325
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	425
BstF5I	GGATG	2 cut(s)	246, 321
BstKTI	GATC	3 cut(s)	16, 253, 328
BstMAI	GTCTC	2 cut(s)	301, 479
BstMBI	GATC	3 cut(s)	13, 250, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	393, 454
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	246, 321
BtsIMutI	CAGTG	2 cut(s)	181, 455
BveI	ACCTGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	134
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	2 cut(s)	370, 479
CviJI	RGCY	6 cut(s)	55, 89, 131, 351, 390, 467
CviKI_1	RGCY	6 cut(s)	55, 89, 131, 351, 390, 467
CviQI	GTAC	1 cut(s)	134
DpnI	GATC	3 cut(s)	15, 252, 327
DpnII	GATC	3 cut(s)	13, 250, 325
DraI	TTTAAA	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	2 cut(s)	373, 482
FaiI	YATR	8 cut(s)	40, 66, 333, 371, 428, 433, 480, 499
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	369, 478
FauI	CCCGC	1 cut(s)	237
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	382, 468
FokI	GGATG	2 cut(s)	253, 328
Fsp4HI	GCNGC	2 cut(s)	382, 468
FspBI	CTAG	3 cut(s)	57, 309, 416
GluI	GCNGC	2 cut(s)	382, 468
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	2 cut(s)	373, 482
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	2 cut(s)	16, 260
Hpy188III	TCNNGA	2 cut(s)	254, 416
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	216, 381, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	373, 482
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	13, 250, 325
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	2 cut(s)	393, 454
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	3 cut(s)	57, 309, 416
MaeIII	GTNAC	2 cut(s)	271, 283
MalI	GATC	3 cut(s)	15, 252, 327
MboI	GATC	3 cut(s)	13, 250, 325
MboII	GAAGA	1 cut(s)	23
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	3 cut(s)	356, 373, 459
MnlI	CCTC	1 cut(s)	147
MseI	TTAA	2 cut(s)	167, 458
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	387
NdeII	GATC	3 cut(s)	13, 250, 325
NlaIII	CATG	2 cut(s)	373, 482
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	2 cut(s)	271, 283
PfeI	GAWTC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	383, 469
PshBI	ATTAAT	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	167, 458
SatI	GCNGC	2 cut(s)	382, 468
Sau3AI	GATC	3 cut(s)	13, 250, 325
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	7 cut(s)	100, 133, 139, 177, 230, 314, 392
SfaNI	GCATC	1 cut(s)	231
Sse9I	AATT	3 cut(s)	356, 373, 459
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	3 cut(s)	57, 309, 416
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	425
TasI	AATT	3 cut(s)	356, 373, 459
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	2 cut(s)	167, 458
Tru9I	TTAA	2 cut(s)	167, 458
TscAI	CASTG	2 cut(s)	188, 455
TseFI	GTSAC	2 cut(s)	271, 283
TseI	GCWGC	2 cut(s)	381, 467
Tsp45I	GTSAC	2 cut(s)	271, 283
TspDTI	ATGAA	2 cut(s)	99, 386
TspRI	CASTG	2 cut(s)	188, 455
Van91I	CCANNNNNTGG	1 cut(s)	375
VspI	ATTAAT	1 cut(s)	458
XapI	RAATTY	1 cut(s)	356
XbaI	TCTAGA	1 cut(s)	415
XmaJI	CCTAGG	1 cut(s)	56
XspI	CTAG	3 cut(s)	57, 309, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.