Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

29255198 .. 29261904

Gene Structure 6707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGGCTGGCAGGGATGGAGGACACGGCGGAGCTGCTGGAGAAGAAGCTAGCGTCGGAAATTTCGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCCTGTTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGGGTTTGTAGACAAAAGAATGTAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCGTGGTGTTTCCCCAGACCAGCTTTACGATACTGTTTGCAAGCAGGTTGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATCGCGGAACTTTACGATACAAATATATCAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCTGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGTTGATGAAGCTGGGGTAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTATGTCATCTCAGCAATGCTTTAAAGAAGGTTTCACACTGGGAAACTGGAAAACCACTTCCATTGAAATGCACACCAATCAGGTTTGGCTCTTGGATGGGGGGTGGTCGAGATGGAAATTCCAATGTGACAGCAAAGGAGAGTCACAAAAGATGTCTCGCTTTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

230

Amino Acids

26.13

Weight (kDa)

8.27

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	13 - 221	4.4e-45	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	438
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	1 cut(s)	303
AciI	CCGC	2 cut(s)	29, 303
AcsI	RAATTY	3 cut(s)	60, 346, 640
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	513
AgsI	TTSAA	3 cut(s)	398, 481, 589
AhlI	ACTAGT	1 cut(s)	371
AluBI	AGCT	8 cut(s)	34, 49, 75, 201, 231, 433, 467, 509
AluI	AGCT	8 cut(s)	34, 49, 75, 201, 231, 433, 467, 509
Alw26I	GTCTC	2 cut(s)	348, 683
AlwNI	CAGNNNCTG	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	34, 207
ApoI	RAATTY	3 cut(s)	60, 346, 640
AseI	ATTAAT	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	403
AsuII	TTCGAA	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	21, 219
BccI	CCATC	4 cut(s)	10, 121, 613, 629
BceAI	ACGGC	1 cut(s)	42
BcoDI	GTCTC	2 cut(s)	348, 683
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	3 cut(s)	50, 372, 691
BfmI	CTRYAG	1 cut(s)	205
BfuAI	ACCTGC	1 cut(s)	243
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	2 cut(s)	35, 208
BlsI	GCNGC	2 cut(s)	36, 209
BmiI	GGNNCC	1 cut(s)	440
BmrI	ACTGGG	1 cut(s)	571
BmtI	GCTAGC	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	571
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	434
Bpu14I	TTCGAA	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bse1I	ACTGG	3 cut(s)	455, 566, 574
Bse3DI	GCAATG	2 cut(s)	132, 544
BseGI	GGATG	3 cut(s)	21, 283, 624
BseMI	GCAATG	2 cut(s)	132, 544
BseMII	CTCAG	1 cut(s)	547
BseNI	ACTGG	3 cut(s)	455, 566, 574
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	21, 219
BseYI	CCCAGC	1 cut(s)	467
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	481
BsmAI	GTCTC	2 cut(s)	348, 683
BsmFI	GGGAC	1 cut(s)	481
Bso31I	GGTCTC	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	364, 400
BspACI	CCGC	2 cut(s)	29, 303
BspCNI	CTCAG	1 cut(s)	546
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	440
BspMAI	CTGCAG	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	243
BspOI	GCTAGC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	438
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	2 cut(s)	132, 544
BsrI	ACTGG	3 cut(s)	455, 566, 574
BssMI	GATC	2 cut(s)	364, 400
Bst4CI	ACNGT	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	9, 51, 250
BstDEI	CTNAG	3 cut(s)	76, 434, 533
BstF5I	GGATG	3 cut(s)	21, 283, 624
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	2 cut(s)	367, 403
BstMAI	GTCTC	2 cut(s)	348, 683
BstMBI	GATC	2 cut(s)	364, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	21, 219
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BtsCI	GGATG	3 cut(s)	21, 283, 624
BtsIMutI	CAGTG	1 cut(s)	559
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	9, 51, 250
CaiI	CAGNNNCTG	1 cut(s)	204
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	512
CspCI	CAANNNNNGTGG	4 cut(s)	439, 474, 567, 602
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	3 cut(s)	76, 434, 533
DpnI	GATC	2 cut(s)	366, 402
DpnII	GATC	2 cut(s)	364, 400
DraI	TTTAAA	2 cut(s)	345, 546
EciI	GGCGGA	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	159
FaiI	YATR	5 cut(s)	324, 389, 418, 444, 526
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	35, 208
FokI	GGATG	3 cut(s)	28, 270, 631
Fsp4HI	GCNGC	2 cut(s)	35, 208
FspBI	CTAG	3 cut(s)	50, 372, 691
GluI	GCNGC	2 cut(s)	35, 208
GsaI	CCCAGC	1 cut(s)	471
GsuI	CTGGAG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	664
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	3 cut(s)	58, 329, 405
Hpy188III	TCNNGA	2 cut(s)	265, 632
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	544
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4V	TGCA	4 cut(s)	207, 248, 281, 594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	3 cut(s)	76, 434, 533
Kzo9I	GATC	2 cut(s)	364, 400
LmnI	GCTCC	3 cut(s)	31, 103, 490
Lsp1109I	GCAGC	2 cut(s)	21, 219
MaeI	CTAG	3 cut(s)	50, 372, 691
MaeIII	GTNAC	2 cut(s)	649, 665
MalI	GATC	2 cut(s)	366, 402
MboI	GATC	2 cut(s)	364, 400
MboII	GAAGA	4 cut(s)	55, 79, 389, 410
MflI	RGATCY	1 cut(s)	400
MluCI	AATT	5 cut(s)	60, 121, 294, 346, 640
MlyI	GAGTC	1 cut(s)	673
MmeI	TCCRAC	2 cut(s)	36, 237
MnlI	CCTC	6 cut(s)	13, 73, 76, 128, 253, 525
MseI	TTAA	5 cut(s)	194, 297, 344, 350, 545
MslI	CAYNNNNRTG	1 cut(s)	589
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	2 cut(s)	364, 400
NheI	GCTAGC	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	2 cut(s)	649, 665
NspV	TTCGAA	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	36, 209
PleI	GAGTC	1 cut(s)	672
PpsI	GAGTC	1 cut(s)	672
PshBI	ATTAAT	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	589
SaqAI	TTAA	5 cut(s)	194, 297, 344, 350, 545
SatI	GCNGC	2 cut(s)	35, 208
Sau3AI	GATC	2 cut(s)	364, 400
SchI	GAGTC	1 cut(s)	673
SfcI	CTRYAG	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	589
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	5 cut(s)	60, 121, 294, 346, 640
SsiI	CCGC	2 cut(s)	29, 303
SspMI	CTAG	3 cut(s)	50, 372, 691
TaaI	ACNGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	65, 264, 631
TaqII	GACCGA	1 cut(s)	372
TasI	AATT	5 cut(s)	60, 121, 294, 346, 640
Tru1I	TTAA	5 cut(s)	194, 297, 344, 350, 545
Tru9I	TTAA	5 cut(s)	194, 297, 344, 350, 545
TscAI	CASTG	1 cut(s)	566
TseFI	GTSAC	2 cut(s)	649, 665
TseI	GCWGC	2 cut(s)	34, 207
Tsp45I	GTSAC	2 cut(s)	649, 665
TspDTI	ATGAA	2 cut(s)	134, 477
TspRI	CASTG	1 cut(s)	566
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	3 cut(s)	60, 346, 640
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	3 cut(s)	50, 372, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.