Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

68978322 .. 68980627

Gene Structure 2306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28095

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGCTCAAGTTGTTGCTTCATTGACGTTGCCTCGTTTTATCAGCACACTGTTGAACATAAGATATATGAGTGTGAGGTTGAGATTGCTCTTACTGCACATCCTACACAAATTAATCGCGGAACCTTACTATACAAACATATCAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCTGGTGCGAGAGATAACTTCTGTATGGAAAACAGATGAGCTTAGGCACCATAAACCCACGCCAGTTGATGAAGCTAGGGCAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTATACCTCATTATTTACGTCGTGTCAGCAATGCTTTAAAGAAGTTCTTTATATGCAGATACTACCTTCTGTCTTTCTATACTTCTTGTCATAATGTTTTCTTAATTTATTTATCAGCACACTGGGAAACTGGAAAACCACTTCCGTTGAAATGCACACCAATCAGGTTTGGGTCTTGGATGCGGGGTGATCAAGAGGGAAATCCCAATGTGACGGCAAAGGTCACAAAAGATGTCTCGCTTTTATCTACGTGGATGACTATTGATCTCTATATTAGAGAAGTGGATAGCCTGAAATTTGAACTATCCATGAATTGGTGCAGCGATAGCTTGTCAAAACTGGCACAAGAGATTCTAGAGCAAGGTATGACATATTGCAGTTATTTTCAGTGGTCATTAATTTTGGCTGCTTGGTATCATGTGGAGACTACCAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

257

Amino Acids

30.02

Weight (kDa)

6.59

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	14 - 228	1e-49	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	264
AccB7I	CCANNNNNTGG	1 cut(s)	648
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	120, 517
AcsI	RAATTY	2 cut(s)	163, 629
AfiI	CCNNNNNNNGG	1 cut(s)	648
AgsI	TTSAA	5 cut(s)	56, 215, 307, 484, 635
AhlI	ACTAGT	1 cut(s)	188
AluBI	AGCT	5 cut(s)	6, 259, 293, 335, 663
AluI	AGCT	5 cut(s)	6, 259, 293, 335, 663
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	165, 574, 752
ApeKI	GCWGC	2 cut(s)	654, 740
ApoI	RAATTY	2 cut(s)	163, 629
AseI	ATTAAT	2 cut(s)	114, 731
AsuHPI	GGTGA	2 cut(s)	220, 533
BanI	GGYRCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	666, 727
BceAI	ACGGC	1 cut(s)	564
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	3 cut(s)	165, 574, 752
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	3 cut(s)	189, 294, 689
BfuAI	ACCTGC	1 cut(s)	290
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	2 cut(s)	655, 741
BlsI	GCNGC	2 cut(s)	656, 742
BmiI	GGNNCC	2 cut(s)	124, 266
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	648
Bse1I	ACTGG	4 cut(s)	281, 461, 469, 678
Bse3DI	GCAATG	1 cut(s)	370
BseGI	GGATG	3 cut(s)	100, 519, 594
BseLI	CCNNNNNNNGG	1 cut(s)	648
BseMI	GCAATG	1 cut(s)	370
BseNI	ACTGG	4 cut(s)	281, 461, 469, 678
BseXI	GCAGC	2 cut(s)	666, 727
BsgI	GTGCAG	2 cut(s)	81, 673
Bsh1236I	CGCG	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	648
BsmAI	GTCTC	3 cut(s)	165, 574, 752
BsmFI	GGGAC	1 cut(s)	307
Bso31I	GGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	181, 217, 523, 598
BspACI	CCGC	2 cut(s)	120, 517
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	124, 266
BspMI	ACCTGC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	264
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	370
BsrI	ACTGG	4 cut(s)	281, 461, 469, 678
BssMI	GATC	4 cut(s)	181, 217, 523, 598
Bst4CI	ACNGT	1 cut(s)	52
BstBAI	YACGTR	1 cut(s)	585
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	3 cut(s)	100, 519, 594
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	4 cut(s)	184, 220, 526, 601
BstMAI	GTCTC	3 cut(s)	165, 574, 752
BstMBI	GATC	4 cut(s)	181, 217, 523, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 660
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	666, 727
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BtsCI	GGATG	3 cut(s)	100, 519, 594
BtsIMutI	CAGTG	3 cut(s)	48, 454, 728
BveI	ACCTGC	1 cut(s)	290
CspCI	CAANNNNNGTGG	4 cut(s)	265, 300, 462, 497
CviAII	CATG	2 cut(s)	643, 752
CviJI	RGCY	7 cut(s)	6, 259, 293, 335, 624, 663, 740
CviKI_1	RGCY	7 cut(s)	6, 259, 293, 335, 624, 663, 740
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	4 cut(s)	183, 219, 525, 600
DpnII	GATC	4 cut(s)	181, 217, 523, 598
DraI	TTTAAA	2 cut(s)	162, 372
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	646, 755
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	2 cut(s)	642, 751
FauI	CCCGC	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	2 cut(s)	655, 741
FokI	GGATG	3 cut(s)	87, 526, 601
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	655, 741
FspBI	CTAG	3 cut(s)	189, 294, 689
GluI	GCNGC	2 cut(s)	655, 741
Hin1II	CATG	2 cut(s)	646, 755
HinfI	GANTC	1 cut(s)	685
HphI	GGTGA	2 cut(s)	220, 533
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	2 cut(s)	527, 689
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	3 cut(s)	27, 352, 584
HpyCH4V	TGCA	5 cut(s)	98, 390, 489, 654, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 660
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	3 cut(s)	27, 352, 584
Hsp92II	CATG	2 cut(s)	646, 755
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	181, 217, 523, 598
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	9 cut(s)	192, 206, 285, 294, 442, 450, 484, 638, 659
Lsp1109I	GCAGC	2 cut(s)	666, 727
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	3 cut(s)	189, 294, 689
MaeII	ACGT	3 cut(s)	27, 352, 584
MaeIII	GTNAC	2 cut(s)	544, 556
MalI	GATC	4 cut(s)	183, 219, 525, 600
MboI	GATC	4 cut(s)	181, 217, 523, 598
MboII	GAAGA	2 cut(s)	206, 227
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	6 cut(s)	111, 163, 438, 629, 646, 732
MnlI	CCTC	4 cut(s)	43, 70, 351, 523
MseI	TTAA	6 cut(s)	114, 161, 167, 371, 437, 731
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	95, 660
NdeII	GATC	4 cut(s)	181, 217, 523, 598
NlaIII	CATG	2 cut(s)	646, 755
NlaIV	GGNNCC	2 cut(s)	124, 266
NmuCI	GTSAC	2 cut(s)	544, 556
PfeI	GAWTC	1 cut(s)	685
PflMI	CCANNNNNTGG	1 cut(s)	648
PkrI	GCNGC	2 cut(s)	656, 742
Ppu21I	YACGTR	1 cut(s)	585
PshBI	ATTAAT	2 cut(s)	114, 731
Psp124BI	GAGCTC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	124, 266
PsuI	RGATCY	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	6 cut(s)	114, 161, 167, 371, 437, 731
SatI	GCNGC	2 cut(s)	655, 741
Sau3AI	GATC	4 cut(s)	181, 217, 523, 598
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	6 cut(s)	111, 163, 438, 629, 646, 732
SsiI	CCGC	2 cut(s)	120, 517
SspMI	CTAG	3 cut(s)	189, 294, 689
SstI	GAGCTC	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	3 cut(s)	30, 355, 587
TaqII	GACCGA	1 cut(s)	189
TasI	AATT	6 cut(s)	111, 163, 438, 629, 646, 732
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	6 cut(s)	114, 161, 167, 371, 437, 731
Tru9I	TTAA	6 cut(s)	114, 161, 167, 371, 437, 731
TscAI	CASTG	3 cut(s)	55, 461, 728
TseFI	GTSAC	2 cut(s)	544, 556
TseI	GCWGC	2 cut(s)	654, 740
Tsp45I	GTSAC	2 cut(s)	544, 556
TspDTI	ATGAA	3 cut(s)	10, 303, 659
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	3 cut(s)	55, 461, 728
Van91I	CCANNNNNTGG	1 cut(s)	648
VspI	ATTAAT	2 cut(s)	114, 731
XapI	RAATTY	2 cut(s)	163, 629
XbaI	TCTAGA	1 cut(s)	688
XspI	CTAG	3 cut(s)	189, 294, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.