Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

46120509 .. 46127953

Gene Structure 7445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAAGCGGTCAAATACATCCTGAGCAATCACCTATTCCATATGAACTTGGGAGTCTTGAAAAATTATGTGGTGGTTGATGATGCTATTAAGATCATCAACCTCGGTGCGAGAGATAACTTCGTATGGCAAACGGATGAGCTTAGACACCATAAACCCACACCGATTGATGAAGCTAGGGCAGGTTTGAACATTGTGGAGCAGCCCCTTTGGAAAGCTGTACCTCATTATTTACGTCGTGTCGACATTGCTTTCAAGAAGGTTTGTCTTCAAATTCGTTTCTGTGCTTGTAAAATCTTTCGGGGTACTCTACGATCAACCGAGCAAGGAGAAATGGTACGGTCAAAATTTGGGCTGCCACAGATTGCAGTCGGACAGCTAGAGGTGTATTGCTTGCAACGTTGCGTCCACCACACCCTCCTCAAGAACAAAAGTAGCGTAACCTCATGGAGGAGATCTCAAAGATCAATTGTCGAATTTACGGAGCGTAGTCTACAAAAATCCAGAATTCCTTATTTACTTCCAGGAGGCTACATCCCGAGGCTGAGCTTGGCTTCCTCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

188

Amino Acids

21.67

Weight (kDa)

9.85

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	41 - 88	4.7e-10	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	100 - 157	4.8e-07	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	173
AccI	GTMKAC	2 cut(s)	243, 493
AciI	CCGC	1 cut(s)	8
AclI	AACGTT	1 cut(s)	400
AcsI	RAATTY	4 cut(s)	273, 347, 476, 507
AfaI	GTAC	3 cut(s)	222, 307, 339
AfiI	CCNNNNNNNGG	1 cut(s)	450
AgsI	TTSAA	4 cut(s)	61, 190, 256, 272
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	5 cut(s)	142, 176, 218, 379, 549
AluI	AGCT	5 cut(s)	142, 176, 218, 379, 549
Ama87I	CYCGRG	1 cut(s)	538
ApeKI	GCWGC	2 cut(s)	202, 355
ApoI	RAATTY	4 cut(s)	273, 347, 476, 507
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	214, 342
BciT130I	CCWGG	1 cut(s)	525
BfaI	CTAG	2 cut(s)	177, 380
BfuAI	ACCTGC	1 cut(s)	173
BglII	AGATCT	1 cut(s)	455
BisI	GCNGC	2 cut(s)	203, 356
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	2 cut(s)	204, 357
Bme1390I	CCNGG	1 cut(s)	525
BmeT110I	CYCGRG	1 cut(s)	538
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	260
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
Bpu10I	CCTNAGC	1 cut(s)	23
Bpu1102I	GCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	103, 539
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	103, 539
BseGI	GGATG	3 cut(s)	18, 142, 534
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	14, 536
BseRI	GAGGAG	2 cut(s)	410, 466
BseXI	GCAGC	2 cut(s)	214, 342
BsiHKCI	CYCGRG	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	538
Bsp143I	GATC	4 cut(s)	93, 314, 455, 464
Bsp1720I	GCTNAGC	1 cut(s)	545
BspACI	CCGC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	15, 537
BspMI	ACCTGC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	103, 539
BssMI	GATC	4 cut(s)	93, 314, 455, 464
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	3 cut(s)	23, 143, 545
BstENI	CCTNNNNNAGG	1 cut(s)	448
BstF5I	GGATG	3 cut(s)	18, 142, 534
BstKTI	GATC	4 cut(s)	96, 317, 458, 467
BstMBI	GATC	4 cut(s)	93, 314, 455, 464
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	523
BstV1I	GCAGC	2 cut(s)	214, 342
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
BtsCI	GGATG	3 cut(s)	18, 142, 534
BveI	ACCTGC	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	395
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	3 cut(s)	221, 306, 338
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	1 cut(s)	447
CviQI	GTAC	3 cut(s)	221, 306, 338
DdeI	CTNAG	3 cut(s)	23, 143, 545
DpnI	GATC	4 cut(s)	95, 316, 457, 466
DpnII	GATC	4 cut(s)	93, 314, 455, 464
Eco88I	CYCGRG	1 cut(s)	538
EcoNI	CCTNNNNNAGG	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	523
FaeI	CATG	1 cut(s)	450
FaiI	YATR	7 cut(s)	42, 44, 69, 127, 153, 448, 565
FatI	CATG	1 cut(s)	446
FauNDI	CATATG	1 cut(s)	42
FblI	GTMKAC	2 cut(s)	243, 493
Fnu4HI	GCNGC	2 cut(s)	203, 356
FokI	GGATG	3 cut(s)	5, 149, 521
Fsp4HI	GCNGC	2 cut(s)	203, 356
FspBI	CTAG	2 cut(s)	177, 380
GluI	GCNGC	2 cut(s)	203, 356
HgaI	GACGC	1 cut(s)	394
Hin1II	CATG	1 cut(s)	450
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	54
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	244, 409, 494
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	6 cut(s)	22, 58, 256, 424, 504, 538
Hpy8I	GTNNAC	3 cut(s)	244, 409, 494
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	2 cut(s)	235, 400
HpyCH4V	TGCA	2 cut(s)	368, 397
HpyF3I	CTNAG	3 cut(s)	23, 143, 545
HpySE526I	ACGT	2 cut(s)	235, 400
Hsp92II	CATG	1 cut(s)	450
Kzo9I	GATC	4 cut(s)	93, 314, 455, 464
LmnI	GCTCC	2 cut(s)	199, 484
LpnPI	CCDG	5 cut(s)	35, 168, 510, 517, 537
Lsp1109I	GCAGC	2 cut(s)	214, 342
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	177, 380
MaeII	ACGT	2 cut(s)	235, 400
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	4 cut(s)	95, 316, 457, 466
MboI	GATC	4 cut(s)	93, 314, 455, 464
MboII	GAAGA	1 cut(s)	260
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	1 cut(s)	455
MluCI	AATT	6 cut(s)	64, 273, 347, 468, 476, 507
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	9 cut(s)	113, 234, 376, 428, 431, 444, 454, 521, 534
MseI	TTAA	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	525
MunI	CAATTG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	525
NdeI	CATATG	1 cut(s)	42
NdeII	GATC	4 cut(s)	93, 314, 455, 464
NlaIII	CATG	1 cut(s)	450
PfoI	TCCNGGA	1 cut(s)	523
PkrI	GCNGC	2 cut(s)	204, 357
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp1406I	AACGTT	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	455
RsaI	GTAC	3 cut(s)	222, 307, 339
RsaNI	GTAC	3 cut(s)	221, 306, 338
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	203, 356
Sau3AI	GATC	4 cut(s)	93, 314, 455, 464
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	525
SfaNI	GCATC	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	6 cut(s)	64, 273, 347, 468, 476, 507
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	2 cut(s)	177, 380
StyD4I	CCNGG	1 cut(s)	523
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	2 cut(s)	238, 403
TaqI	TCGA	2 cut(s)	243, 474
TasI	AATT	6 cut(s)	64, 273, 347, 468, 476, 507
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseI	GCWGC	2 cut(s)	202, 355
TspDTI	ATGAA	2 cut(s)	59, 186
TspGWI	ACGGA	2 cut(s)	149, 497
XagI	CCTNNNNNAGG	1 cut(s)	448
XapI	RAATTY	4 cut(s)	273, 347, 476, 507
XmiI	GTMKAC	2 cut(s)	243, 493
XspI	CTAG	2 cut(s)	177, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.