Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

41954287 .. 41963794

Gene Structure 9508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG325300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGTCGAGTGTGGTGAAATCCCTAATCAAATCATCTTCCTCACACCGCCAAATGGATGCAGCTTCTCAGCATGGTGTTTCCCGAGACCTGCTTTACGATACCGTTTGCAAGCAGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATCGCGGAACCTTACAATACAAACATATCAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAAAGATATGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGACACCATAAACCCACACCAGTTGATGAAGCTAGGGCAGGTTTGAACATTGTGGAGCAGCCCCTTTGGAAAGCTGTACCTCATTATTTACGTCGTGTCAGCAATGCTTTAAAGAAGATCATTCACAGACGAGGCTATACCAAGTCCGGCGTCGTCGGTGTCACTCACCCTCGCCATGTCGCCGCCATCTCCATCGTCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

163

Amino Acids

18.43

Weight (kDa)

9.88

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	13 - 144	2.8e-29	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	99, 317
AccII	CGCG	1 cut(s)	162
AciI	CCGC	3 cut(s)	49, 162, 471
AcsI	RAATTY	1 cut(s)	205
AcyI	GRCGYC	2 cut(s)	5, 438
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	2 cut(s)	55, 486
AgsI	TTSAA	1 cut(s)	334
AhlI	ACTAGT	1 cut(s)	230
AluBI	AGCT	4 cut(s)	65, 286, 320, 362
AluI	AGCT	4 cut(s)	65, 286, 320, 362
Alw26I	GTCTC	2 cut(s)	81, 207
Ama87I	CYCGRG	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	62, 346
ApoI	RAATTY	1 cut(s)	205
AseI	ATTAAT	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	28, 446
AvaI	CYCGRG	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	74, 358
BccI	CCATC	2 cut(s)	482, 488
BcoDI	GTCTC	2 cut(s)	81, 207
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	2 cut(s)	231, 321
BfuAI	ACCTGC	2 cut(s)	99, 317
BisI	GCNGC	3 cut(s)	63, 347, 471
BlsI	GCNGC	3 cut(s)	64, 348, 472
BmeT110I	CYCGRG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	166
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	243
BsaHI	GRCGYC	2 cut(s)	5, 438
BsaI	GGTCTC	2 cut(s)	81, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 486
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	397
BseGI	GGATG	2 cut(s)	64, 142
BseLI	CCNNNNNNNGG	2 cut(s)	55, 486
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	74, 358
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	2 cut(s)	55, 486
BsmAI	GTCTC	2 cut(s)	81, 207
Bso31I	GGTCTC	2 cut(s)	81, 207
BsoBI	CYCGRG	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	223, 405
BspACI	CCGC	3 cut(s)	49, 162, 471
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	166
BspMI	ACCTGC	2 cut(s)	99, 317
BspTNI	GGTCTC	2 cut(s)	81, 207
BsrDI	GCAATG	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	308
BssMI	GATC	2 cut(s)	223, 405
BssNI	GRCGYC	2 cut(s)	5, 438
Bst4CI	ACNGT	1 cut(s)	106
BstACI	GRCGYC	2 cut(s)	5, 438
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	69, 287
BstF5I	GGATG	2 cut(s)	64, 142
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	226, 408
BstMAI	GTCTC	2 cut(s)	81, 207
BstMBI	GATC	2 cut(s)	223, 405
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	74, 358
BstV2I	GAAGAC	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	64, 142
BveI	ACCTGC	2 cut(s)	99, 317
Cac8I	GCNNGC	1 cut(s)	113
CseI	GACGC	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	365
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	2 cut(s)	74, 464
CviJI	RGCY	6 cut(s)	65, 286, 320, 349, 362, 423
CviKI_1	RGCY	6 cut(s)	65, 286, 320, 349, 362, 423
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	2 cut(s)	69, 287
DpnI	GATC	2 cut(s)	225, 407
DpnII	GATC	2 cut(s)	223, 405
DraI	TTTAAA	2 cut(s)	204, 399
Eco31I	GGTCTC	2 cut(s)	81, 207
Eco88I	CYCGRG	1 cut(s)	84
FaeI	CATG	2 cut(s)	77, 467
FaiI	YATR	7 cut(s)	75, 183, 248, 271, 297, 426, 465
FatI	CATG	2 cut(s)	73, 463
Fnu4HI	GCNGC	3 cut(s)	63, 347, 471
FokI	GGATG	2 cut(s)	71, 129
Fsp4HI	GCNGC	3 cut(s)	63, 347, 471
FspBI	CTAG	2 cut(s)	231, 321
GluI	GCNGC	3 cut(s)	63, 347, 471
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	427
Hin1I	GRCGYC	2 cut(s)	5, 438
Hin1II	CATG	2 cut(s)	77, 467
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	2 cut(s)	28, 446
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	2 cut(s)	84, 124
Hpy99I	CGWCG	5 cut(s)	10, 384, 443, 446, 488
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	62, 111, 140
HpyF3I	CTNAG	2 cut(s)	69, 287
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	2 cut(s)	5, 438
Hsp92II	CATG	2 cut(s)	77, 467
Kzo9I	GATC	2 cut(s)	223, 405
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	6 cut(s)	101, 104, 234, 312, 321, 448
Lsp1109I	GCAGC	2 cut(s)	74, 358
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	231, 321
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	2 cut(s)	225, 407
MboI	GATC	2 cut(s)	223, 405
MboII	GAAGA	3 cut(s)	30, 248, 415
MluCI	AATT	2 cut(s)	153, 205
MnlI	CCTC	5 cut(s)	52, 112, 378, 413, 468
MseI	TTAA	4 cut(s)	156, 203, 209, 398
MspI	CCGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	162
NdeII	GATC	2 cut(s)	223, 405
NlaIII	CATG	2 cut(s)	77, 467
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	64, 348, 472
PshBI	ATTAAT	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	4 cut(s)	156, 203, 209, 398
SatI	GCNGC	3 cut(s)	63, 347, 471
Sau3AI	GATC	2 cut(s)	223, 405
SfaNI	GCATC	1 cut(s)	49
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	2 cut(s)	153, 205
SsiI	CCGC	3 cut(s)	49, 162, 471
SspMI	CTAG	2 cut(s)	231, 321
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	8, 123
TaqII	GACCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	153, 205
TauI	GCSGC	1 cut(s)	473
Tru1I	TTAA	4 cut(s)	156, 203, 209, 398
Tru9I	TTAA	4 cut(s)	156, 203, 209, 398
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	2 cut(s)	62, 346
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	1 cut(s)	330
VspI	ATTAAT	1 cut(s)	156
XapI	RAATTY	1 cut(s)	205
XspI	CTAG	2 cut(s)	231, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.