Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

11337909 .. 11339063

Gene Structure 1155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAGCACCAGAGCTTCAGGAATAGTAGTGTCTATCAAGGATTGACTTCTAACTTTGGTTGTACGCTTCTGCAGCGTGGTGTTTCCCCAAACCAGCTTTACGATACTGTTTGCAAGCAGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATCTCGTAACCTTACAATACAAACATATCAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCTGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGTTGATGAAGCTGGGGCAGGTTTGAACATTGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

121

Amino Acids

13.86

Weight (kDa)

5.82

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	14 - 120	2.5e-24	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	260, 352
AhlI	ACTAGT	1 cut(s)	233
AluBI	AGCT	4 cut(s)	15, 97, 304, 338
AluI	AGCT	4 cut(s)	15, 97, 304, 338
Alw26I	GTCTC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	208
AseI	ATTAAT	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	210
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	335
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	226, 262
BspLI	GGNNCC	1 cut(s)	311
BspMAI	CTGCAG	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	326
BssMI	GATC	2 cut(s)	226, 262
Bst4CI	ACNGT	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	229, 265
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	226, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	63
CspCI	CAANNNNNGTGG	2 cut(s)	310, 345
CviJI	RGCY	4 cut(s)	15, 97, 304, 338
CviKI_1	RGCY	4 cut(s)	15, 97, 304, 338
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	2 cut(s)	228, 264
DpnII	GATC	2 cut(s)	226, 262
DraI	TTTAAA	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	210
FaiI	YATR	4 cut(s)	186, 251, 289, 315
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	1 cut(s)	74
GsaI	CCCAGC	1 cut(s)	342
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	19, 127
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	73, 114, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	305
Kzo9I	GATC	2 cut(s)	226, 262
LpnPI	CCDG	9 cut(s)	4, 23, 104, 107, 237, 251, 324, 330, 339
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	228, 264
MboI	GATC	2 cut(s)	226, 262
MboII	GAAGA	2 cut(s)	251, 272
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	2 cut(s)	156, 208
MnlI	CCTC	1 cut(s)	115
MseI	TTAA	3 cut(s)	159, 206, 212
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeII	GATC	2 cut(s)	226, 262
NlaIV	GGNNCC	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	75
PshBI	ATTAAT	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	311
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	159, 206, 212
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	226, 262
SetI	ASST	8 cut(s)	17, 99, 126, 173, 226, 306, 340, 349
SfcI	CTRYAG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	2 cut(s)	156, 208
SspMI	CTAG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	126
TaqII	GACCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	156, 208
Tru1I	TTAA	3 cut(s)	159, 206, 212
Tru9I	TTAA	3 cut(s)	159, 206, 212
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	17, 348
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	1 cut(s)	208
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.