Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

12334219 .. 12343333

Gene Structure 9115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0136700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCTCCTCGGTCGTTGCGCTTCCACCGACGCCGGAGTCGGCCTGAACAGCTACGCCGACGAGACTGATTCTAGGTTTCGTCACAAATCTACAATCTCGATGCGAATCTCTGCCTTCTTCATCTCTATCAGAACGTGTGAGCACTCAAATTGTTACACTGATATTGGGAAGCTTCTGAAGATGAAGCTAGATGAGGTTTCAGCTAGGACCATGGAGGTATTGGTGGATGCTTTTTCTAGTTCTGCAGGGCTGTCCACCTTCTCCTATACTGAGTTGGACTATGAATGGGGTGAACAGAATAGAGATTGCCAGTACGTTGAGGAGGAGGACCTCATGAGGTTCATGATTGAGAAAGAGGCACTGATGGCAATTCCCACTCTCGATCCAGCCTTTGTCTCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

134

Amino Acids

15.14

Weight (kDa)

4.62

Isoelectric Point (pI)

27.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	134
AluBI	AGCT	4 cut(s)	51, 172, 187, 203
AluI	AGCT	4 cut(s)	51, 172, 187, 203
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	56, 400
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	207, 328
AsuHPI	GGTGA	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	207, 328
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	56, 400
BfaI	CTAG	4 cut(s)	72, 188, 204, 237
BfmI	CTRYAG	1 cut(s)	243
Bme18I	GGWCC	2 cut(s)	207, 328
BmgT120I	GGNCC	2 cut(s)	207, 328
BmsI	GCATC	2 cut(s)	90, 217
BsaBI	GATNNNNATC	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	7, 210
Bse1I	ACTGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	7, 210
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	335, 338
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	33
BsmAI	GTCTC	2 cut(s)	56, 400
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	382
Bsp19I	CCATGG	1 cut(s)	210
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	262
BspHI	TCATGA	2 cut(s)	333, 342
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	7, 210
BssMI	GATC	1 cut(s)	382
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	2 cut(s)	56, 400
BstMBI	GATC	1 cut(s)	382
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 365
BstSFI	CTRYAG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	156, 359
CciI	TCATGA	2 cut(s)	333, 342
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	207, 328
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	211, 334, 343
CviJI	RGCY	7 cut(s)	42, 51, 172, 187, 203, 250, 389
CviKI_1	RGCY	7 cut(s)	42, 51, 172, 187, 203, 250, 389
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	207, 328
Eco57I	CTGAAG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	214, 337, 346
FaiI	YATR	5 cut(s)	212, 267, 282, 335, 344
FatI	CATG	3 cut(s)	210, 333, 342
FokI	GGATG	1 cut(s)	239
FspBI	CTAG	4 cut(s)	72, 188, 204, 237
GlaI	GCGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	214, 337, 346
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	3 cut(s)	36, 68, 105
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	2 cut(s)	255, 293
Hpy188I	TCNGA	2 cut(s)	131, 177
Hpy188III	TCNNGA	4 cut(s)	97, 334, 343, 380
Hpy8I	GTNNAC	2 cut(s)	255, 293
Hpy99I	CGWCG	2 cut(s)	32, 62
HpyAV	CCTTC	2 cut(s)	124, 268
HpyCH4IV	ACGT	2 cut(s)	134, 315
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 365
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	2 cut(s)	134, 315
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	214, 337, 346
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	5 cut(s)	46, 56, 231, 323, 399
LweI	GCATC	2 cut(s)	90, 217
MaeI	CTAG	4 cut(s)	72, 188, 204, 237
MaeII	ACGT	2 cut(s)	134, 315
MaeIII	GTNAC	2 cut(s)	80, 152
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	3 cut(s)	109, 190, 390
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	2 cut(s)	148, 369
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	9 cut(s)	17, 187, 208, 313, 316, 319, 330, 341, 349
MspI	CCGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	48, 365
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	3 cut(s)	214, 337, 346
NmuCI	GTSAC	1 cut(s)	80
PagI	TCATGA	2 cut(s)	333, 342
PfeI	GAWTC	2 cut(s)	68, 105
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	207, 328
PspPPI	RGGWCCY	1 cut(s)	328
PstI	CTGCAG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	2 cut(s)	207, 328
SchI	GAGTC	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	2 cut(s)	90, 217
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	2 cut(s)	207, 328
Sse9I	AATT	2 cut(s)	148, 369
SspMI	CTAG	4 cut(s)	72, 188, 204, 237
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	2 cut(s)	137, 318
TaqI	TCGA	2 cut(s)	98, 381
TasI	AATT	2 cut(s)	148, 369
TfiI	GAWTC	2 cut(s)	68, 105
TscAI	CASTG	2 cut(s)	163, 366
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	109, 197, 297, 331
TspRI	CASTG	2 cut(s)	163, 366
VpaK11BI	GGWCC	2 cut(s)	207, 328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	4 cut(s)	72, 188, 204, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.