Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

29673795 .. 29678416

Gene Structure 4622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31451

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGACGGTTTGGCGTAAGGGCGTCAAGGGGAAGCGGGCAAATGCTAGAGGGGAGAAGAAGGAAGAGAAGCAATATCTGGATAAACGCTCCAATACTGGAACTCATGGTTACTTCTGCAGCGTGGTGTTTCCCCAGACCAGCTTTACGATACCATTTGCAAGCAGGAGGTCAGATTGTTCTTACTGCACATCCTACACAAATTAATCGCGGAACCTTACAATACAAACATATCAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCTGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCGCCATAAACCCACGCCAGGTGATGAAGCTAGGGCAGGTTTGAACATTGTGCAGCAGTCCCTTTGGAAAGCTGTGCCTCATTATTTACGTTGTGTCAGCGATGCTTTAAAGAAGTTCTTTATATGCAGATACTACCTTCTCACACTGGAAAACCACTTCCATTTTTGCACACCAATCAGGTATGGGTCTTGGAGAGGGGAGGTTGATCGAGATGGAAATTCCAATGTGACAGCAAAGGTCACAAAAGATGTCTCGCTTTTATCTAGGTGGATGACTATTGATCTCTATATTCAAGAAGTGGATAGCCTGAAATTTGAACTATCCATGAATAGGTGCGGCGATATCTTGTCAAAACTGGCACAAGAGATTCTAGATCACAGTATGACATATTGCAGTTATTTTCAGTGGTCATTAATATTGGCTGCTTGGTATCATGTGGTGACTATCAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

269

Amino Acids

31.25

Weight (kDa)

9.35

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	58 - 240	2e-47	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	354
AccII	CGCG	1 cut(s)	210
AciI	CCGC	3 cut(s)	36, 210, 690
AcsI	RAATTY	3 cut(s)	253, 571, 665
AcyI	GRCGYC	2 cut(s)	23, 355
AfiI	CCNNNNNNNGG	2 cut(s)	371, 684
AgsI	TTSAA	4 cut(s)	305, 397, 647, 671
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	4 cut(s)	143, 349, 383, 425
AluI	AGCT	4 cut(s)	143, 349, 383, 425
Alw26I	GTCTC	2 cut(s)	255, 610
ApeKI	GCWGC	3 cut(s)	119, 406, 776
ApoI	RAATTY	3 cut(s)	253, 571, 665
AseI	ATTAAT	2 cut(s)	204, 767
AspLEI	GCGC	1 cut(s)	357
AsuHPI	GGTGA	3 cut(s)	310, 386, 805
BanI	GGYRCC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	131, 418, 763
BccI	CCATC	1 cut(s)	560
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	255, 610
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	5 cut(s)	47, 279, 384, 618, 725
BfmI	CTRYAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	380
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	4 cut(s)	120, 407, 691, 777
BlsI	GCNGC	4 cut(s)	121, 408, 692, 778
Bme1390I	CCNGG	1 cut(s)	372
BmiI	GGNNCC	2 cut(s)	214, 356
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	350
BsaHI	GRCGYC	2 cut(s)	23, 355
BsaI	GGTCTC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 684
Bse1I	ACTGG	3 cut(s)	102, 504, 714
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	190, 630
BseLI	CCNNNNNNNGG	2 cut(s)	371, 684
BseNI	ACTGG	3 cut(s)	102, 504, 714
BseXI	GCAGC	3 cut(s)	131, 418, 763
BsgI	GTGCAG	2 cut(s)	171, 425
Bsh1236I	CGCG	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	354
BslFI	GGGAC	2 cut(s)	18, 397
BslI	CCNNNNNNNGG	2 cut(s)	371, 684
BsmAI	GTCTC	2 cut(s)	255, 610
BsmFI	GGGAC	2 cut(s)	18, 397
Bso31I	GGTCTC	1 cut(s)	255
Bsp143I	GATC	5 cut(s)	271, 307, 559, 634, 727
BspACI	CCGC	3 cut(s)	36, 210, 690
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	214, 356
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	380
BspT107I	GGYRCC	1 cut(s)	354
BspTNI	GGTCTC	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	102, 504, 714
BssMI	GATC	5 cut(s)	271, 307, 559, 634, 727
BssNI	GRCGYC	2 cut(s)	23, 355
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	9, 734
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	2 cut(s)	23, 355
BstC8I	GCNNGC	2 cut(s)	38, 162
BstDEI	CTNAG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	190, 630
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	5 cut(s)	274, 310, 562, 637, 730
BstMAI	GTCTC	2 cut(s)	255, 610
BstMBI	GATC	5 cut(s)	271, 307, 559, 634, 727
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	131, 418, 763
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	190, 630
BtsIMutI	CAGTG	2 cut(s)	497, 764
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	2 cut(s)	38, 162
CfoI	GCGC	1 cut(s)	357
CseI	GACGC	1 cut(s)	12
CviAII	CATG	3 cut(s)	106, 679, 788
CviJI	RGCY	6 cut(s)	143, 349, 383, 425, 660, 776
CviKI_1	RGCY	6 cut(s)	143, 349, 383, 425, 660, 776
DdeI	CTNAG	1 cut(s)	350
DinI	GGCGCC	1 cut(s)	356
DpnI	GATC	5 cut(s)	273, 309, 561, 636, 729
DpnII	GATC	5 cut(s)	271, 307, 559, 634, 727
DraI	TTTAAA	2 cut(s)	252, 462
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	255
Eco32I	GATATC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	697
EgeI	GGCGCC	1 cut(s)	356
EheI	GGCGCC	1 cut(s)	356
FaeI	CATG	3 cut(s)	109, 682, 791
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	2 cut(s)	18, 397
FatI	CATG	3 cut(s)	105, 678, 787
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	4 cut(s)	120, 407, 691, 777
FokI	GGATG	2 cut(s)	177, 637
Fsp4HI	GCNGC	4 cut(s)	120, 407, 691, 777
FspBI	CTAG	5 cut(s)	47, 279, 384, 618, 725
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	4 cut(s)	120, 407, 691, 777
HaeII	RGCGCY	1 cut(s)	358
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	357
Hin1I	GRCGYC	2 cut(s)	23, 355
Hin1II	CATG	3 cut(s)	109, 682, 791
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HinfI	GANTC	1 cut(s)	721
HphI	GGTGA	3 cut(s)	310, 386, 805
Hpy188I	TCNGA	2 cut(s)	174, 236
Hpy188III	TCNNGA	4 cut(s)	79, 563, 647, 725
HpyAV	CCTTC	2 cut(s)	54, 500
HpyCH4III	ACNGT	2 cut(s)	9, 734
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	7 cut(s)	119, 160, 188, 406, 480, 522, 747
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	1 cut(s)	442
Hsp92I	GRCGYC	2 cut(s)	23, 355
Hsp92II	CATG	3 cut(s)	109, 682, 791
HspAI	GCGC	1 cut(s)	355
KasI	GGCGCC	1 cut(s)	354
Kzo9I	GATC	5 cut(s)	271, 307, 559, 634, 727
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	3 cut(s)	131, 418, 763
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	5 cut(s)	47, 279, 384, 618, 725
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	4 cut(s)	109, 580, 592, 793
MalI	GATC	5 cut(s)	273, 309, 561, 636, 729
MboI	GATC	5 cut(s)	271, 307, 559, 634, 727
MboII	GAAGA	4 cut(s)	69, 76, 296, 317
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	4 cut(s)	201, 253, 571, 665
Mly113I	GGCGCC	1 cut(s)	355
MnlI	CCTC	5 cut(s)	43, 161, 441, 542, 547
MseI	TTAA	5 cut(s)	204, 251, 257, 461, 767
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	210
NarI	GGCGCC	1 cut(s)	355
NdeII	GATC	5 cut(s)	271, 307, 559, 634, 727
NlaIII	CATG	3 cut(s)	109, 682, 791
NlaIV	GGNNCC	2 cut(s)	214, 356
NmuCI	GTSAC	3 cut(s)	580, 592, 793
PfeI	GAWTC	1 cut(s)	721
PkrI	GCNGC	4 cut(s)	121, 408, 692, 778
PluTI	GGCGCC	1 cut(s)	358
PshBI	ATTAAT	2 cut(s)	204, 767
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	214, 356
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	307
SaqAI	TTAA	5 cut(s)	204, 251, 257, 461, 767
SatI	GCNGC	4 cut(s)	120, 407, 691, 777
Sau3AI	GATC	5 cut(s)	271, 307, 559, 634, 727
ScrFI	CCNGG	1 cut(s)	372
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	117
SfoI	GGCGCC	1 cut(s)	356
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	4 cut(s)	201, 253, 571, 665
SsiI	CCGC	3 cut(s)	36, 210, 690
SspDI	GGCGCC	1 cut(s)	354
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	5 cut(s)	47, 279, 384, 618, 725
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	9, 734
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	1 cut(s)	562
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	4 cut(s)	201, 253, 571, 665
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	1 cut(s)	721
Tru1I	TTAA	5 cut(s)	204, 251, 257, 461, 767
Tru9I	TTAA	5 cut(s)	204, 251, 257, 461, 767
TscAI	CASTG	2 cut(s)	504, 764
TseFI	GTSAC	3 cut(s)	580, 592, 793
TseI	GCWGC	3 cut(s)	119, 406, 776
Tsp45I	GTSAC	3 cut(s)	580, 592, 793
TspDTI	ATGAA	2 cut(s)	393, 695
TspRI	CASTG	2 cut(s)	504, 764
VspI	ATTAAT	2 cut(s)	204, 767
XapI	RAATTY	3 cut(s)	253, 571, 665
XbaI	TCTAGA	1 cut(s)	724
XspI	CTAG	5 cut(s)	47, 279, 384, 618, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.