Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

30915197 .. 30918206

Gene Structure 3010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACAAGTTCCGGATTTGCAATTGTAGCAGTATATGTCGATGACATGAAACTGATTGGAACTCTAGATGAGTCAAGAGAAACTGCTAAATACTTGAAATCCGAATTTGAGATGAAAGAGCATGGGAAAACACGCGAACTTATTACTAAGTCGTTACCTAAATCCACCTTCGAGAAATATGTGAAGAGCATCGGATTGAGAAAGTTATTCCATGATTATAGCAATCAGGGGGAACTTCTGCAGCGTGGTGTTTCCCCAGACCAGCTGTACGATACCATTTGCAAGCAGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATCGTGGAACCTTACAATACAAACATATCAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCTGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCACCAAGTAATGAAGCTAGGGTTTGAACATTATGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTATACGTCGTGTCAGCGATGCTTTAAAGAAGCACACTGGAAAACCACTTCCATTGAAATGCACACCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

205

Amino Acids

23.6

Weight (kDa)

7.75

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	77 - 196	1.2e-20	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	477
AccII	CGCG	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	11
AcsI	RAATTY	2 cut(s)	104, 376
AfaI	GTAC	2 cut(s)	269, 535
AgsI	TTSAA	4 cut(s)	97, 428, 503, 601
AhlI	ACTAGT	1 cut(s)	401
AluBI	AGCT	4 cut(s)	265, 472, 493, 531
AluI	AGCT	4 cut(s)	265, 472, 493, 531
Alw26I	GTCTC	1 cut(s)	378
Aor13HI	TCCGGA	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	241
ApoI	RAATTY	2 cut(s)	104, 376
AseI	ATTAAT	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	378
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	4 cut(s)	65, 402, 494, 616
BfmI	CTRYAG	1 cut(s)	239
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	337, 479
BmsI	GCATC	2 cut(s)	198, 553
BpiI	GAAGAC	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	586
BseAI	TCCGGA	1 cut(s)	11
BseGI	GGATG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	477
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	503
BsmAI	GTCTC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	503
Bso31I	GGTCTC	1 cut(s)	378
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	394, 430
BspEI	TCCGGA	1 cut(s)	11
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	337, 479
BspMAI	CTGCAG	1 cut(s)	243
BspQI	GCTCTTC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	477
BspTNI	GGTCTC	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	586
BssMI	GATC	2 cut(s)	394, 430
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	147, 473
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	2 cut(s)	397, 433
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	2 cut(s)	394, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	239
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BtgZI	GCGATG	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	268, 534
CspCI	CAANNNNNGTGG	2 cut(s)	579, 614
CviAII	CATG	3 cut(s)	46, 122, 212
CviJI	RGCY	4 cut(s)	265, 472, 493, 531
CviKI_1	RGCY	4 cut(s)	265, 472, 493, 531
CviQI	GTAC	2 cut(s)	268, 534
DdeI	CTNAG	2 cut(s)	147, 473
DpnI	GATC	2 cut(s)	396, 432
DpnII	GATC	2 cut(s)	394, 430
DraI	TTTAAA	2 cut(s)	375, 570
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	378
FaeI	CATG	3 cut(s)	49, 125, 215
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	3 cut(s)	45, 121, 211
Fnu4HI	GCNGC	1 cut(s)	242
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	4 cut(s)	65, 402, 494, 616
GluI	GCNGC	1 cut(s)	242
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	3 cut(s)	49, 125, 215
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	433
Hpy188I	TCNGA	3 cut(s)	103, 194, 359
Hpy188III	TCNNGA	5 cut(s)	12, 65, 75, 172, 295
Hpy99I	CGWCG	1 cut(s)	555
HpyAV	CCTTC	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	550
HpyCH4V	TGCA	5 cut(s)	20, 241, 282, 311, 606
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	147, 473
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	3 cut(s)	49, 125, 215
Kpn2I	TCCGGA	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	394, 430
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	1 cut(s)	512
LpnPI	CCDG	8 cut(s)	25, 212, 270, 272, 275, 405, 419, 567
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	198, 553
MaeI	CTAG	4 cut(s)	65, 402, 494, 616
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	2 cut(s)	396, 432
MboI	GATC	2 cut(s)	394, 430
MboII	GAAGA	3 cut(s)	196, 419, 440
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	4 cut(s)	21, 104, 324, 376
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	2 cut(s)	283, 547
MroI	TCCGGA	1 cut(s)	11
MseI	TTAA	4 cut(s)	327, 374, 380, 569
MslI	CAYNNNNRTG	1 cut(s)	601
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	21
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	2 cut(s)	394, 430
NlaIII	CATG	3 cut(s)	49, 125, 215
NlaIV	GGNNCC	2 cut(s)	337, 479
PciSI	GCTCTTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	243
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PshBI	ATTAAT	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	337, 479
PstI	CTGCAG	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	2 cut(s)	269, 535
RsaNI	GTAC	2 cut(s)	268, 534
RseI	CAYNNNNRTG	1 cut(s)	601
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	4 cut(s)	327, 374, 380, 569
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	2 cut(s)	394, 430
SchI	GAGTC	1 cut(s)	80
SfaNI	GCATC	2 cut(s)	198, 553
SfcI	CTRYAG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	601
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	4 cut(s)	21, 104, 324, 376
SspMI	CTAG	4 cut(s)	65, 402, 494, 616
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	3 cut(s)	39, 171, 294
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	4 cut(s)	21, 104, 324, 376
Tru1I	TTAA	4 cut(s)	327, 374, 380, 569
Tru9I	TTAA	4 cut(s)	327, 374, 380, 569
TscAI	CASTG	1 cut(s)	586
TseI	GCWGC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	62, 128, 503
TspRI	CASTG	1 cut(s)	586
VspI	ATTAAT	1 cut(s)	327
XapI	RAATTY	2 cut(s)	104, 376
XbaI	TCTAGA	1 cut(s)	64
XspI	CTAG	4 cut(s)	65, 402, 494, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.