Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

30681949 .. 30683832

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGGCTGGCGGGGATGGAGGACACGGCGGAGCTGCTGGAGAAGAAGCTAGCGTCGGAAATTTCAAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGCTTTCAGCCATTACCTCAATTTGTTGGGCATTGCTGAAGCTCATCACAGGGTTCGAAGACAAAAGAATGTGGCATCCATATCAAAATATTGTGATGATATTTTTAATCAGCTTCTGCAGCGTGGTGTTTCCCCAGACCAGCTTTATGATACAATTTGCAAGCAGGAGGTCGAGATTGTTCTTTCTGCACATCCTACACAAATTAATCACGGAACCTTACAATACAAACATATCAGACTTTCTCGTCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGGGAAGACAGAGATGTGGTGATTGAAGACCTGGTGCGAGAGTTAACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGGTGATGAAGCTAGGGCAGGTCACAAAAGATGTCTCGCTTTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

173

Amino Acids

19.94

Weight (kDa)

6.75

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	13 - 165	4.8e-35	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	456
AciI	CCGC	2 cut(s)	11, 29
AcsI	RAATTY	2 cut(s)	60, 355
AcuI	CTGAAG	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	66, 407
AjnI	CCWGG	2 cut(s)	411, 472
AluBI	AGCT	8 cut(s)	34, 49, 75, 143, 214, 244, 451, 485
AluI	AGCT	8 cut(s)	34, 49, 75, 143, 214, 244, 451, 485
Alw26I	GTCTC	2 cut(s)	357, 512
AlwNI	CAGNNNCTG	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	34, 220
ApoI	RAATTY	2 cut(s)	60, 355
AseI	ATTAAT	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	412, 488
AsuII	TTCGAA	1 cut(s)	157
AsuNHI	GCTAGC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	3 cut(s)	166, 393, 414
BbvI	GCAGC	2 cut(s)	21, 232
BccI	CCATC	1 cut(s)	10
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	2 cut(s)	413, 474
BcoDI	GTCTC	2 cut(s)	357, 512
BfaI	CTAG	4 cut(s)	50, 381, 486, 520
BfmI	CTRYAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	482
BisI	GCNGC	2 cut(s)	35, 221
BlsI	GCNGC	2 cut(s)	36, 222
Bme1390I	CCNGG	2 cut(s)	413, 474
BmiI	GGNNCC	2 cut(s)	316, 458
BmrFI	CCNGG	2 cut(s)	413, 474
BmsI	GCATC	1 cut(s)	185
BmtI	GCTAGC	1 cut(s)	53
BpiI	GAAGAC	3 cut(s)	166, 393, 414
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	413, 474
BseGI	GGATG	3 cut(s)	21, 176, 292
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMI	GCAATG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	21, 232
BsgI	GTGCAG	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	2 cut(s)	357, 512
Bso31I	GGTCTC	1 cut(s)	357
Bsp119I	TTCGAA	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	2 cut(s)	11, 29
BspLI	GGNNCC	2 cut(s)	316, 458
BspMAI	CTGCAG	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	482
BspOI	GCTAGC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	456
BspTNI	GGTCTC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	132
BssMI	GATC	1 cut(s)	373
BssSI	CACGAG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	413, 474
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	9, 51, 263
BstDEI	CTNAG	2 cut(s)	76, 452
BstF5I	GGATG	3 cut(s)	21, 176, 292
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	2 cut(s)	357, 512
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNI	CCWGG	2 cut(s)	413, 474
BstSCI	CCNGG	2 cut(s)	411, 472
BstSFI	CTRYAG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	21, 232
BstV2I	GAAGAC	3 cut(s)	166, 393, 414
BtsCI	GGATG	3 cut(s)	21, 176, 292
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	3 cut(s)	9, 51, 263
CaiI	CAGNNNCTG	1 cut(s)	217
CseI	GACGC	1 cut(s)	42
CsiI	ACCWGGT	2 cut(s)	411, 472
DdeI	CTNAG	2 cut(s)	76, 452
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
DraI	TTTAAA	1 cut(s)	354
DraIII	CACNNNGTG	1 cut(s)	476
DrdI	GACNNNNNNGTC	1 cut(s)	345
DseDI	GACNNNNNNGTC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	411, 472
FaiI	YATR	5 cut(s)	182, 249, 333, 436, 462
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FauI	CCCGC	1 cut(s)	4
Fnu4HI	GCNGC	2 cut(s)	35, 221
FokI	GGATG	3 cut(s)	28, 163, 279
Fsp4HI	GCNGC	2 cut(s)	35, 221
FspBI	CTAG	4 cut(s)	50, 381, 486, 520
GluI	GCNGC	2 cut(s)	35, 221
GsuI	CTGGAG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HpaI	GTTAAC	1 cut(s)	426
HphI	GGTGA	2 cut(s)	412, 488
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	2 cut(s)	58, 338
Hpy188III	TCNNGA	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	426
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	220, 261, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	76, 452
KspAI	GTTAAC	1 cut(s)	426
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	2 cut(s)	21, 232
LweI	GCATC	1 cut(s)	185
MabI	ACCWGGT	2 cut(s)	411, 472
MaeI	CTAG	4 cut(s)	50, 381, 486, 520
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	4 cut(s)	55, 171, 398, 419
MluCI	AATT	5 cut(s)	60, 121, 255, 303, 355
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	5 cut(s)	13, 73, 76, 128, 262
MseI	TTAA	5 cut(s)	207, 306, 353, 359, 425
MspR9I	CCNGG	2 cut(s)	413, 474
MvaI	CCWGG	2 cut(s)	413, 474
MwoI	GCNNNNNNNGC	1 cut(s)	220
NdeII	GATC	1 cut(s)	373
NheI	GCTAGC	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	316, 458
NmuCI	GTSAC	1 cut(s)	494
NspV	TTCGAA	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	36, 222
PshBI	ATTAAT	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	411, 472
PspGI	CCWGG	2 cut(s)	411, 472
PspN4I	GGNNCC	2 cut(s)	316, 458
PstI	CTGCAG	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	217
SaqAI	TTAA	5 cut(s)	207, 306, 353, 359, 425
SatI	GCNGC	2 cut(s)	35, 221
Sau3AI	GATC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	413, 474
SexAI	ACCWGGT	2 cut(s)	411, 472
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	218
SfuI	TTCGAA	1 cut(s)	157
Sse9I	AATT	5 cut(s)	60, 121, 255, 303, 355
SsiI	CCGC	2 cut(s)	11, 29
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	4 cut(s)	50, 381, 486, 520
StyD4I	CCNGG	2 cut(s)	411, 472
TaqI	TCGA	2 cut(s)	157, 273
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	5 cut(s)	60, 121, 255, 303, 355
Tru1I	TTAA	5 cut(s)	207, 306, 353, 359, 425
Tru9I	TTAA	5 cut(s)	207, 306, 353, 359, 425
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	2 cut(s)	34, 220
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	495
TspGWI	ACGGA	1 cut(s)	327
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	2 cut(s)	60, 355
XspI	CTAG	4 cut(s)	50, 381, 486, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.