Rh1BG396000

Phosphoenolpyruvate carboxylase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
52055570 .. 52060939
5370 bp
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UTR
Exon/CDS
Intron
Rh1BG396000.1

Sequence Viewer

Length: 387 bp
ATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGTTTTCAGCCGTTACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGGGTTCATAGACAAAAGAATGTGGCATCCCTATCAAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCGTGATGTTTCCCCAGACCAGTTTTACGATACAGTTTGCAAGCAGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCACTATAAACCCACACCAGTTGATGAAGCTAGGGCAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTACGTCGTGTCAGCAATGCTTTAAAGAAGCACACTGGGAAATTGGAAAACCACTTCCGTTGA

Protein Analysis

128

Amino Acids

14.97

Weight (kDa)

9.23

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEPcase PF00311 1 - 64 4.1e-06 Phosphoenolpyruvate carboxylase
PEPcase PF00311 68 - 123 3e-14 Phosphoenolpyruvate carboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 2 cut(s) 187, 266
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 315
AgsI TTSAA 1 cut(s) 283
AluBI AGCT 5 cut(s) 6, 145, 235, 269, 311
AluI AGCT 5 cut(s) 6, 145, 235, 269, 311
AlwNI CAGNNNCTG 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 151
BauI CACGAG 1 cut(s) 30
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 27
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 149
BfuAI ACCTGC 2 cut(s) 187, 266
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 116
BmuI ACTGGG 1 cut(s) 369
Bpu10I CCTNAGC 1 cut(s) 236
Bse1I ACTGG 3 cut(s) 172, 257, 364
Bse3DI GCAATG 2 cut(s) 63, 346
BseGI GGATG 1 cut(s) 107
BseMI GCAATG 2 cut(s) 63, 346
BseNI ACTGG 3 cut(s) 172, 257, 364
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 163
BslFI GGGAC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 283
BspMAI CTGCAG 1 cut(s) 153
BspMI ACCTGC 2 cut(s) 187, 266
BsrDI GCAATG 2 cut(s) 63, 346
BsrI ACTGG 3 cut(s) 172, 257, 364
BssSI CACGAG 1 cut(s) 30
Bst2BI CACGAG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 7, 236
BstF5I GGATG 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 357
BveI ACCTGC 2 cut(s) 187, 266
Cac8I GCNNGC 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 148
Csp6I GTAC 1 cut(s) 314
CspCI CAANNNNNGTGG 3 cut(s) 241, 276, 365
CviJI RGCY 6 cut(s) 6, 42, 145, 235, 269, 311
CviKI_1 RGCY 6 cut(s) 6, 42, 145, 235, 269, 311
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 2 cut(s) 7, 236
DraI TTTAAA 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 90
FaiI YATR 3 cut(s) 90, 220, 246
FaqI GGGAC 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 152
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 152
FspBI CTAG 1 cut(s) 270
GluI GCNGC 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 333
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 151, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 2 cut(s) 7, 236
HpySE526I ACGT 1 cut(s) 328
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 7 cut(s) 67, 180, 182, 185, 261, 270, 345
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 116
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 44
MluCI AATT 2 cut(s) 52, 365
MnlI CCTC 4 cut(s) 4, 7, 59, 327
MseI TTAA 2 cut(s) 138, 347
MwoI GCNNNNNNNGC 1 cut(s) 151
PaqCI CACCTGC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 153
PstI CTGCAG 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 148
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 138, 347
SatI GCNGC 1 cut(s) 152
SfaNI GCATC 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 52, 365
SspMI CTAG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 331
TasI AATT 2 cut(s) 52, 365
Tru1I TTAA 2 cut(s) 138, 347
Tru9I TTAA 2 cut(s) 138, 347
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 65, 77, 279
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 1 cut(s) 364
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.