Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

72244902 .. 72247355

Gene Structure 2454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52426

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCAGAGTGCTTGTAGTATGAGGCTGGCAGGGATGGAAGACACGACGGAGCTGCTGGAGAAGAAGCTAGCGTCGGAAATTTCGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCCTGTTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGGGTTTGTAGACAAAAGAATGTAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCGTGGTGTTTCCCCAAACCAGCTTTACGATACTGTTTGCAAGCAGGTTGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATCGCGTAACCTTACAATACAAACATATCAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCTGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGTTGATGAAGCTGGGGCAGGTTTGAACATTGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

173

Amino Acids

19.74

Weight (kDa)

5.74

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	16 - 172	1.3e-28	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	261, 491
AccB1I	GGYRCC	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	1 cut(s)	321
AcsI	RAATTY	2 cut(s)	78, 364
AcuI	CTGAAG	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	416, 508
AhlI	ACTAGT	1 cut(s)	389
AluBI	AGCT	7 cut(s)	52, 67, 93, 219, 249, 460, 494
AluI	AGCT	7 cut(s)	52, 67, 93, 219, 249, 460, 494
Alw26I	GTCTC	1 cut(s)	366
AlwNI	CAGNNNCTG	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	52, 225
ApoI	RAATTY	2 cut(s)	78, 364
AseI	ATTAAT	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	421
AsuII	TTCGAA	1 cut(s)	83
AsuNHI	GCTAGC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	465
BbsI	GAAGAC	2 cut(s)	45, 402
BbvI	GCAGC	2 cut(s)	39, 237
BccI	CCATC	2 cut(s)	28, 139
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BcoDI	GTCTC	1 cut(s)	366
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	2 cut(s)	68, 390
BfmI	CTRYAG	1 cut(s)	223
BfuAI	ACCTGC	2 cut(s)	261, 491
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	2 cut(s)	53, 226
BlsI	GCNGC	2 cut(s)	54, 227
BmiI	GGNNCC	1 cut(s)	467
BmtI	GCTAGC	1 cut(s)	71
BpiI	GAAGAC	2 cut(s)	45, 402
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	461
Bpu14I	TTCGAA	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bse1I	ACTGG	1 cut(s)	482
Bse3DI	GCAATG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	39, 301
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	39, 237
BseYI	CCCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	465
BsmAI	GTCTC	1 cut(s)	366
Bso31I	GGTCTC	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	382, 418
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	467
BspMAI	CTGCAG	1 cut(s)	227
BspMI	ACCTGC	2 cut(s)	261, 491
BspOI	GCTAGC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	465
BspTNI	GGTCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	482
BssMI	GATC	2 cut(s)	382, 418
Bst4CI	ACNGT	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	27, 69, 268
BstDEI	CTNAG	2 cut(s)	94, 461
BstF5I	GGATG	2 cut(s)	39, 301
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	2 cut(s)	385, 421
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	2 cut(s)	382, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	223
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	39, 237
BstV2I	GAAGAC	2 cut(s)	45, 402
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	39, 301
BveI	ACCTGC	2 cut(s)	261, 491
Cac8I	GCNNGC	3 cut(s)	27, 69, 268
CaiI	CAGNNNCTG	1 cut(s)	222
CseI	GACGC	1 cut(s)	60
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviJI	RGCY	9 cut(s)	25, 52, 67, 93, 129, 219, 249, 460, 494
CviKI_1	RGCY	9 cut(s)	25, 52, 67, 93, 129, 219, 249, 460, 494
DdeI	CTNAG	2 cut(s)	94, 461
DpnI	GATC	2 cut(s)	384, 420
DpnII	GATC	2 cut(s)	382, 418
DraI	TTTAAA	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	177
FaiI	YATR	5 cut(s)	20, 342, 407, 445, 471
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	53, 226
FokI	GGATG	2 cut(s)	46, 288
Fsp4HI	GCNGC	2 cut(s)	53, 226
FspBI	CTAG	2 cut(s)	68, 390
GluI	GCNGC	2 cut(s)	53, 226
GsaI	CCCAGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	60
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	2 cut(s)	76, 347
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	1 cut(s)	179
Hpy99I	CGWCG	2 cut(s)	49, 76
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	4, 225, 266, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	2 cut(s)	94, 461
Kzo9I	GATC	2 cut(s)	382, 418
LmnI	GCTCC	2 cut(s)	49, 121
Lsp1109I	GCAGC	2 cut(s)	39, 237
MaeI	CTAG	2 cut(s)	68, 390
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	384, 420
MboI	GATC	2 cut(s)	382, 418
MboII	GAAGA	5 cut(s)	50, 73, 97, 407, 428
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	4 cut(s)	78, 139, 312, 364
MmeI	TCCRAC	2 cut(s)	54, 255
MnlI	CCTC	5 cut(s)	15, 91, 94, 146, 271
MseI	TTAA	4 cut(s)	212, 315, 362, 368
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	2 cut(s)	382, 418
NheI	GCTAGC	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	467
NspV	TTCGAA	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	54, 227
PshBI	ATTAAT	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	494
PspN4I	GGNNCC	1 cut(s)	467
PstI	CTGCAG	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	418
SaqAI	TTAA	4 cut(s)	212, 315, 362, 368
SatI	GCNGC	2 cut(s)	53, 226
Sau3AI	GATC	2 cut(s)	382, 418
SfcI	CTRYAG	1 cut(s)	223
SfuI	TTCGAA	1 cut(s)	83
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	4 cut(s)	78, 139, 312, 364
SspMI	CTAG	2 cut(s)	68, 390
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	83, 282
TaqII	GACCGA	1 cut(s)	390
TasI	AATT	4 cut(s)	78, 139, 312, 364
Tru1I	TTAA	4 cut(s)	212, 315, 362, 368
Tru9I	TTAA	4 cut(s)	212, 315, 362, 368
TseI	GCWGC	2 cut(s)	52, 225
TspDTI	ATGAA	2 cut(s)	152, 504
TspGWI	ACGGA	1 cut(s)	62
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	2 cut(s)	78, 364
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	2 cut(s)	68, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.