Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

12510943 .. 12513655

Gene Structure 2713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTGAACATTATGATTAAAAGACATGTTGAAAATTTGCTTAGACTAATAATATCAAGCTACTTGCAGCATCTTTTAAATTTAAGAGACCAACCTGATCTTACCGGTGAAGACAGAGGTGCGAGAGATAACTTCGTATGGCAAACAGATGAGCTTAGGCACCATAAGCCCACACCGATTGATGAAGTCAAGGCAGACACCGGGAACCGGAAAACCACGTCCGTTGAAATGCACATCAATCGGGTTTGGCTCTTGGATGGGGGTGATCGAGATGGAAATCCCAATGTGACAGCAAAGATTGCATTGGGGCAGGAATCGGTAGACATGCTGAAACACTTGATGCAATTACCAAATATTTGGATATGGGCACATACAGTGAGTGGGATGAAGAAAAGAAACTGGAATTCTAACAAGAGAGCTCAAAGGAAAAAGGACCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

146

Amino Acids

17.06

Weight (kDa)

9.84

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	1 cut(s)	436
AcsI	RAATTY	3 cut(s)	34, 79, 403
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	25
AgeI	ACCGGT	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	7, 32, 227
AjiI	CACGTC	1 cut(s)	219
AluBI	AGCT	3 cut(s)	60, 154, 419
AluI	AGCT	3 cut(s)	60, 154, 419
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	3 cut(s)	34, 79, 403
AsiGI	ACCGGT	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	119, 275
AvaII	GGWCC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	251, 266
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BcnI	CCSGG	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	439
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	433
BmgBI	CACGTC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	161, 206
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	2 cut(s)	79, 330
BpiI	GAAGAC	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	81
BsaWI	WCCGGW	2 cut(s)	104, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	404
Bse8I	GATNNNNATC	1 cut(s)	276
BseGI	GGATG	2 cut(s)	262, 390
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	404
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	159
BshTI	ACCGGT	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	421
BsiSI	CCGG	3 cut(s)	105, 201, 208
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	81
Bso31I	GGTCTC	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	370, 421
Bsp143I	GATC	2 cut(s)	97, 265
BspACI	CCGC	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	161, 206
BspT107I	GGYRCC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	2 cut(s)	97, 265
Bst4CI	ACNGT	1 cut(s)	376
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	41, 155
BstF5I	GGATG	2 cut(s)	262, 390
BstKTI	GATC	2 cut(s)	100, 268
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	2 cut(s)	97, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 299
BstNSI	RCATGY	2 cut(s)	29, 328
BstSCI	CCNGG	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	357
BtrI	CACGTC	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	262, 390
BtsIMutI	CAGTG	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	433
CspAI	ACCGGT	1 cut(s)	104
CspCI	CAANNNNNGTGG	4 cut(s)	160, 195, 205, 240
CviAII	CATG	2 cut(s)	26, 325
CviJI	RGCY	5 cut(s)	60, 154, 169, 250, 419
CviKI_1	RGCY	5 cut(s)	60, 154, 169, 250, 419
DdeI	CTNAG	2 cut(s)	41, 155
DpnI	GATC	2 cut(s)	99, 267
DpnII	GATC	2 cut(s)	97, 265
DraI	TTTAAA	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	2 cut(s)	29, 328
FaiI	YATR	7 cut(s)	14, 27, 139, 165, 326, 364, 372
FatI	CATG	2 cut(s)	25, 324
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	2 cut(s)	269, 397
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	439
GluI	GCNGC	1 cut(s)	68
HapII	CCGG	3 cut(s)	105, 201, 208
Hin1II	CATG	2 cut(s)	29, 328
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	3 cut(s)	105, 201, 208
HphI	GGTGA	2 cut(s)	119, 275
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	67, 232, 302, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 299
HpyF3I	CTNAG	2 cut(s)	41, 155
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	29, 328
Kzo9I	GATC	2 cut(s)	97, 265
LpnPI	CCDG	6 cut(s)	108, 118, 214, 221, 296, 385
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	2 cut(s)	79, 330
MaeI	CTAG	1 cut(s)	439
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	2 cut(s)	99, 267
MboI	GATC	2 cut(s)	97, 265
MboII	GAAGA	2 cut(s)	122, 400
MhlI	GDGCHC	2 cut(s)	370, 421
MluCI	AATT	4 cut(s)	34, 79, 344, 403
MnlI	CCTC	1 cut(s)	110
MseI	TTAA	3 cut(s)	18, 77, 83
MspI	CCGG	3 cut(s)	105, 201, 208
MspR9I	CCNGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	166, 299
NciI	CCSGG	1 cut(s)	202
NdeII	GATC	2 cut(s)	97, 265
NlaIII	CATG	2 cut(s)	29, 328
NlaIV	GGNNCC	2 cut(s)	161, 206
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	2 cut(s)	29, 328
PciI	ACATGT	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	69
PscI	ACATGT	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	161, 206
PspPI	GGNCC	1 cut(s)	433
SacI	GAGCTC	1 cut(s)	421
SaqAI	TTAA	3 cut(s)	18, 77, 83
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	2 cut(s)	97, 265
Sau96I	GGNCC	1 cut(s)	433
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	2 cut(s)	370, 421
SetI	ASST	6 cut(s)	62, 97, 121, 156, 221, 421
SfaNI	GCATC	2 cut(s)	79, 330
SinI	GGWCC	1 cut(s)	433
Sse9I	AATT	4 cut(s)	34, 79, 344, 403
SsiI	CCGC	1 cut(s)	436
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	1 cut(s)	439
SstI	GAGCTC	1 cut(s)	421
StyD4I	CCNGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	268
TasI	AATT	4 cut(s)	34, 79, 344, 403
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	3 cut(s)	18, 77, 83
Tru9I	TTAA	3 cut(s)	18, 77, 83
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	198, 401
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	3 cut(s)	34, 79, 403
XceI	RCATGY	2 cut(s)	29, 328
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.