Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

67300151 .. 67304332

Gene Structure 4182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG409000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAAAAAACAAAAATTGGTTGAAATTCTTTCTGCTGTGAATTTTATAAGCATTTTGGTGAATTTAGAGAAAGTTGTTGATTTGTGCAGGGTTCATAGACAAAAGAATGTGGCATCCCTATCAAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCGTGATGTTTCCCCAGACCAGTTTTACGATACAGTTTGCAAGCAGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCACTATAAACCCACACCAGTTGATGAAGCTAGGGCAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTACGTCGTGTCAGCAATGCTTTAAAGAAGTTCTTTATATGCAGATACTACCTTCTGCCTTTCTATACATCTTGTCATAATGTTTTCTTAATTTATTTATCAGCACACTGGGAAATTGGAAAACCACTTCCGTTGAAATGCACACCAATCAGGTTTGGGTCTTGGATGCGGGGTGATCAAGATGGAAATCCCACTGTGACAGCAAAGAATCTGCATATGAGGATCACTAGAGTTGGGATCATCAGTATTATAATAGGAATCAGATTGCATTCGGGCAGGAATCTGGTAGACATCCTGAATTCTGAAACACTTAATGCAATTACCAAATATTTGGATATGGGCACATACAGTGAGTGGGATGAAGAAAAGAAACTAGAATCTCTAACAAGAGAGCTCAAAGGAAAAAGACCACTAGTCCCACCTAGCATGGAGGGTACTCTACGATCAACTGAGCAAGGAGAAATGGTACAGTCAGAATTTGGGCGGCCACAGATTGCACTCAGACAGCTAGAGGTGTATTGCTTGCAACGTTGCGTCCACCACACCCTCCTCGAGAACAAAAGTAGTGTAACCTCATGGAGGAGATCTCAAAGATCAGTTGTCAGAATTACTGGAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

316

Amino Acids

36.51

Weight (kDa)

9.41

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	43 - 181	1.6e-22	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	211 - 253	6.4e-07	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	252 - 306	7.8e-07	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	47, 581
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	2 cut(s)	193, 272
AccI	GTMKAC	1 cut(s)	618
AciI	CCGC	2 cut(s)	499, 814
AclI	AACGTT	1 cut(s)	859
AclWI	GGATC	2 cut(s)	560, 575
AcoI	YGGCCR	1 cut(s)	815
AcsI	RAATTY	5 cut(s)	24, 40, 61, 628, 806
AfaI	GTAC	3 cut(s)	321, 766, 798
AfiI	CCNNNNNNNGG	1 cut(s)	909
AgsI	TTSAA	3 cut(s)	23, 289, 466
AhdI	GACNNNNNGTC	1 cut(s)	743
AhlI	ACTAGT	1 cut(s)	742
AluBI	AGCT	6 cut(s)	151, 241, 275, 317, 724, 838
AluI	AGCT	6 cut(s)	151, 241, 275, 317, 724, 838
Alw21I	GWGCWC	1 cut(s)	726
AlwI	GGATC	2 cut(s)	560, 575
AlwNI	CAGNNNCTG	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	881
AoxI	GGCC	1 cut(s)	815
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	5 cut(s)	24, 40, 61, 628, 806
AsuHPI	GGTGA	2 cut(s)	70, 515
AvaI	CYCGRG	1 cut(s)	881
BaeGI	GKGCMC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	726
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	506
BclI	TGATCA	1 cut(s)	505
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	6 cut(s)	276, 558, 704, 743, 753, 839
BfmI	CTRYAG	1 cut(s)	155
BfuAI	ACCTGC	2 cut(s)	193, 272
BglII	AGATCT	1 cut(s)	914
BisI	GCNGC	2 cut(s)	158, 815
BlsI	GCNGC	2 cut(s)	159, 816
BmeRI	GACNNNNNGTC	1 cut(s)	743
BmeT110I	CYCGRG	1 cut(s)	881
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	2 cut(s)	122, 486
BmuI	ACTGGG	1 cut(s)	448
BplI	GAGNNNNNCTC	2 cut(s)	901, 933
Bpu10I	CCTNAGC	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	516
BsaXI	ACNNNNNCTCC	2 cut(s)	780, 810
Bsc4I	CCNNNNNNNGG	1 cut(s)	909
Bse1I	ACTGG	4 cut(s)	178, 263, 443, 946
Bse3DI	GCAATG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	516
BseGI	GGATG	4 cut(s)	113, 501, 621, 694
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	909
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	771, 844
BseNI	ACTGG	4 cut(s)	178, 263, 443, 946
BseRI	GAGGAG	2 cut(s)	869, 925
BseSI	GKGCMC	1 cut(s)	674
BseXI	GCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	817
BsiHKAI	GWGCWC	1 cut(s)	726
BsiHKCI	CYCGRG	1 cut(s)	881
BslFI	GGGAC	2 cut(s)	289, 731
BslI	CCNNNNNNNGG	1 cut(s)	909
BsmFI	GGGAC	2 cut(s)	289, 731
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	1 cut(s)	817
BsoBI	CYCGRG	1 cut(s)	881
Bsp1286I	GDGCHC	2 cut(s)	674, 726
Bsp143I	GATC	6 cut(s)	505, 552, 567, 773, 914, 923
BspACI	CCGC	2 cut(s)	499, 814
BspANI	GGCC	1 cut(s)	817
BspCNI	CTCAG	2 cut(s)	772, 843
BspMAI	CTGCAG	1 cut(s)	159
BspMI	ACCTGC	2 cut(s)	193, 272
BspPI	GGATC	2 cut(s)	560, 575
BsrDI	GCAATG	1 cut(s)	352
BsrI	ACTGG	4 cut(s)	178, 263, 443, 946
BssMI	GATC	6 cut(s)	505, 552, 567, 773, 914, 923
Bst4CI	ACNGT	4 cut(s)	193, 526, 680, 801
BstC8I	GCNNGC	2 cut(s)	200, 854
BstDEI	CTNAG	3 cut(s)	242, 780, 830
BstENI	CCTNNNNNAGG	1 cut(s)	907
BstF5I	GGATG	4 cut(s)	113, 501, 621, 694
BstKTI	GATC	6 cut(s)	508, 555, 570, 776, 917, 926
BstMBI	GATC	6 cut(s)	505, 552, 567, 773, 914, 923
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	155
BstSLI	GKGCMC	1 cut(s)	674
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	914
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	914
BsuRI	GGCC	1 cut(s)	817
BtsCI	GGATG	4 cut(s)	113, 501, 621, 694
BtsIMutI	CAGTG	3 cut(s)	436, 522, 685
BveI	ACCTGC	2 cut(s)	193, 272
Cac8I	GCNNGC	2 cut(s)	200, 854
CaiI	CAGNNNCTG	1 cut(s)	154
CseI	GACGC	1 cut(s)	853
Csp6I	GTAC	3 cut(s)	320, 765, 797
CspCI	CAANNNNNGTGG	4 cut(s)	247, 282, 444, 479
CviAII	CATG	2 cut(s)	757, 906
CviJI	RGCY	7 cut(s)	151, 241, 275, 317, 724, 817, 838
CviKI_1	RGCY	7 cut(s)	151, 241, 275, 317, 724, 817, 838
CviQI	GTAC	3 cut(s)	320, 765, 797
DdeI	CTNAG	3 cut(s)	242, 780, 830
DpnI	GATC	6 cut(s)	507, 554, 569, 775, 916, 925
DpnII	GATC	6 cut(s)	505, 552, 567, 773, 914, 923
DraI	TTTAAA	1 cut(s)	354
DriI	GACNNNNNGTC	1 cut(s)	743
EaeI	YGGCCR	1 cut(s)	815
Eam1105I	GACNNNNNGTC	1 cut(s)	743
Ecl136II	GAGCTC	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	726
Eco53kI	GAGCTC	1 cut(s)	724
Eco88I	CYCGRG	1 cut(s)	881
EcoICRI	GAGCTC	1 cut(s)	724
EcoNI	CCTNNNNNAGG	1 cut(s)	907
EcoRI	GAATTC	1 cut(s)	628
EcoT38I	GRGCYC	1 cut(s)	726
FaeI	CATG	2 cut(s)	760, 909
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	2 cut(s)	289, 731
FatI	CATG	2 cut(s)	756, 905
FauI	CCCGC	1 cut(s)	492
FauNDI	CATATG	1 cut(s)	546
FbaI	TGATCA	1 cut(s)	505
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	2 cut(s)	158, 815
FokI	GGATG	4 cut(s)	100, 508, 608, 701
FriOI	GRGCYC	1 cut(s)	726
Fsp4HI	GCNGC	2 cut(s)	158, 815
FspBI	CTAG	6 cut(s)	276, 558, 704, 743, 753, 839
GluI	GCNGC	2 cut(s)	158, 815
HaeIII	GGCC	1 cut(s)	817
HgaI	GACGC	1 cut(s)	853
Hin1II	CATG	2 cut(s)	760, 909
HinfI	GANTC	4 cut(s)	538, 588, 610, 707
HphI	GGTGA	2 cut(s)	70, 515
Hpy166II	GTNNAC	2 cut(s)	619, 868
Hpy188I	TCNGA	5 cut(s)	593, 634, 805, 833, 935
Hpy188III	TCNNGA	3 cut(s)	509, 625, 883
Hpy8I	GTNNAC	2 cut(s)	619, 868
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	4 cut(s)	193, 526, 680, 801
HpyCH4IV	ACGT	2 cut(s)	334, 859
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	3 cut(s)	242, 780, 830
HpySE526I	ACGT	2 cut(s)	334, 859
Hsp92II	CATG	2 cut(s)	760, 909
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	6 cut(s)	505, 552, 567, 773, 914, 923
LmnI	GCTCC	2 cut(s)	298, 944
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	2 cut(s)	122, 486
MaeI	CTAG	6 cut(s)	276, 558, 704, 743, 753, 839
MaeII	ACGT	2 cut(s)	334, 859
MaeIII	GTNAC	2 cut(s)	526, 898
MalI	GATC	6 cut(s)	507, 554, 569, 775, 916, 925
MboI	GATC	6 cut(s)	505, 552, 567, 773, 914, 923
MboII	GAAGA	1 cut(s)	704
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	2 cut(s)	674, 726
MnlI	CCTC	8 cut(s)	333, 543, 754, 835, 887, 890, 903, 913
MseI	TTAA	4 cut(s)	144, 353, 419, 642
MslI	CAYNNNNRTG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	598
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	6 cut(s)	505, 552, 567, 773, 914, 923
NlaIII	CATG	2 cut(s)	760, 909
NmuCI	GTSAC	1 cut(s)	526
PaeR7I	CTCGAG	1 cut(s)	881
PaqCI	CACCTGC	1 cut(s)	193
PctI	GAATGC	1 cut(s)	598
PfeI	GAWTC	4 cut(s)	538, 588, 610, 707
PkrI	GCNGC	2 cut(s)	159, 816
PsiI	TTATAA	2 cut(s)	47, 581
Psp124BI	GAGCTC	1 cut(s)	726
Psp1406I	AACGTT	1 cut(s)	859
PstI	CTGCAG	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	914
RsaI	GTAC	3 cut(s)	321, 766, 798
RsaNI	GTAC	3 cut(s)	320, 765, 797
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	726
SaqAI	TTAA	4 cut(s)	144, 353, 419, 642
SatI	GCNGC	2 cut(s)	158, 815
Sau3AI	GATC	6 cut(s)	505, 552, 567, 773, 914, 923
SduI	GDGCHC	2 cut(s)	674, 726
SfaNI	GCATC	2 cut(s)	122, 486
SfcI	CTRYAG	1 cut(s)	155
Sfr274I	CTCGAG	1 cut(s)	881
SlaI	CTCGAG	1 cut(s)	881
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SpeI	ACTAGT	1 cut(s)	742
SsiI	CCGC	2 cut(s)	499, 814
SspI	AATATT	1 cut(s)	659
SspMI	CTAG	6 cut(s)	276, 558, 704, 743, 753, 839
SstI	GAGCTC	1 cut(s)	726
TaaI	ACNGT	4 cut(s)	193, 526, 680, 801
TaiI	ACGT	2 cut(s)	337, 862
TaqI	TCGA	1 cut(s)	882
TauI	GCSGC	1 cut(s)	817
TfiI	GAWTC	4 cut(s)	538, 588, 610, 707
Tru1I	TTAA	4 cut(s)	144, 353, 419, 642
Tru9I	TTAA	4 cut(s)	144, 353, 419, 642
TscAI	CASTG	3 cut(s)	443, 529, 685
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	4 cut(s)	17, 83, 285, 705
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	3 cut(s)	443, 529, 685
XagI	CCTNNNNNAGG	1 cut(s)	907
XapI	RAATTY	5 cut(s)	24, 40, 61, 628, 806
XhoI	CTCGAG	1 cut(s)	881
XmiI	GTMKAC	1 cut(s)	618
XspI	CTAG	6 cut(s)	276, 558, 704, 743, 753, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.