Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004950.1

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

41822 .. 44658

Gene Structure 2837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004950.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgaaccaacgcatttgtagaccaacagatgccgtcagcttttccgttacatttgaccgcgtcaactcgcataggacagggaagatgaaaccgaatggcgtcgagtgtgatgaaatccctaatcaaatcatcttcctcacgtcggcaaatggatgcagaaaacggcatagcttgtgggaggtcgagattgttcttactgcacatcctacacaaattaatcgcggaaccttacaatacaaacatatcagactttctcatcttttaaatttaagagaccgacctgatcttactagtgaagacagagatatggtgcgagagttaacttctgtatggcaaacagatgagcttaggcaccataaacccacaccagttgatgaagctggggcaggtttgaacattgtggagcagtccctttggaaagctgtacctcattatttatgtcatgtcaacaatgctttaaagaagatttgtcttcaaattcgtttctgcacactgggaaactggaaaaccacttccattgaaatgcacaccaatcaggtttggctcttggatgggggtgatcgagatggaaatcccaatgtgacagcaaaggtactcgtgggtcttattgatattttattcgtaaatcttctcctaatggtattattcactctcttaaatctaggagagtcctttcatgccaacaaaagacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

231

Amino Acids

26.43

Weight (kDa)

8.56

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	19
AccII	CGCG	2 cut(s)	60, 222
AciI	CCGC	2 cut(s)	58, 222
AcsI	RAATTY	2 cut(s)	265, 477
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	2 cut(s)	426, 594
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	394, 476, 521
AhlI	ACTAGT	1 cut(s)	290
AjiI	CACGTC	1 cut(s)	141
AluBI	AGCT	5 cut(s)	39, 171, 346, 380, 422
AluI	AGCT	5 cut(s)	39, 171, 346, 380, 422
Alw26I	GTCTC	1 cut(s)	267
ApoI	RAATTY	2 cut(s)	265, 477
AseI	ATTAAT	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	351
BauI	CACGAG	1 cut(s)	596
BbsI	GAAGAC	2 cut(s)	303, 464
BccI	CCATC	2 cut(s)	545, 560
BceAI	ACGGC	2 cut(s)	17, 179
BcoDI	GTCTC	1 cut(s)	267
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	2 cut(s)	291, 662
BfuAI	ACCTGC	1 cut(s)	377
BmgBI	CACGTC	1 cut(s)	141
BmiI	GGNNCC	2 cut(s)	226, 353
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	19, 143
BmuI	ACTGGG	1 cut(s)	503
BpiI	GAAGAC	2 cut(s)	303, 464
Bpu10I	CCTNAGC	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	570
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	3 cut(s)	368, 498, 506
Bse8I	GATNNNNATC	1 cut(s)	570
BseGI	GGATG	3 cut(s)	158, 202, 556
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseNI	ACTGG	3 cut(s)	368, 498, 506
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	2 cut(s)	183, 472
Bsh1236I	CGCG	2 cut(s)	60, 222
BshNI	GGYRCC	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	394
Bso31I	GGTCTC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	283, 559
BspACI	CCGC	2 cut(s)	58, 222
BspFNI	CGCG	2 cut(s)	60, 222
BspLI	GGNNCC	2 cut(s)	226, 353
BspMI	ACCTGC	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	267
BsrI	ACTGG	3 cut(s)	368, 498, 506
BssMI	GATC	2 cut(s)	283, 559
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	596
Bst2BI	CACGAG	1 cut(s)	596
BstACI	GRCGYC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	3 cut(s)	158, 202, 556
BstFNI	CGCG	2 cut(s)	60, 222
BstKTI	GATC	2 cut(s)	286, 562
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	283, 559
BstUI	CGCG	2 cut(s)	60, 222
BstV2I	GAAGAC	2 cut(s)	303, 464
BtrI	CACGTC	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	158, 202, 556
BtsIMutI	CAGTG	1 cut(s)	491
BveI	ACCTGC	1 cut(s)	377
CseI	GACGC	2 cut(s)	49, 88
Csp6I	GTAC	2 cut(s)	425, 593
CspCI	CAANNNNNGTGG	4 cut(s)	352, 387, 499, 534
CviAII	CATG	2 cut(s)	443, 677
CviJI	RGCY	6 cut(s)	39, 171, 346, 380, 422, 544
CviKI_1	RGCY	6 cut(s)	39, 171, 346, 380, 422, 544
CviQI	GTAC	2 cut(s)	425, 593
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	2 cut(s)	285, 561
DpnII	GATC	2 cut(s)	283, 559
DraI	TTTAAA	2 cut(s)	264, 459
Eco31I	GGTCTC	1 cut(s)	267
FaeI	CATG	2 cut(s)	446, 680
FaiI	YATR	9 cut(s)	72, 168, 243, 308, 331, 357, 439, 444, 678
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	2 cut(s)	442, 676
FblI	GTMKAC	1 cut(s)	19
FokI	GGATG	3 cut(s)	165, 189, 563
FspBI	CTAG	2 cut(s)	291, 662
GsaI	CCCAGC	1 cut(s)	384
HgaI	GACGC	2 cut(s)	49, 88
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	446, 680
HincII	GTYRAC	3 cut(s)	64, 321, 448
HindII	GTYRAC	3 cut(s)	64, 321, 448
HinfI	GANTC	1 cut(s)	668
HpaI	GTTAAC	1 cut(s)	321
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	4 cut(s)	20, 64, 321, 448
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	2 cut(s)	184, 563
Hpy8I	GTNNAC	4 cut(s)	20, 64, 321, 448
Hpy99I	CGWCG	2 cut(s)	104, 145
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	4 cut(s)	156, 200, 489, 526
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	140
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	446, 680
KspAI	GTTAAC	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	283, 559
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	8 cut(s)	63, 294, 366, 372, 381, 479, 487, 521
LweI	GCATC	2 cut(s)	19, 143
MaeI	CTAG	2 cut(s)	291, 662
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	46, 580
MalI	GATC	2 cut(s)	285, 561
MboI	GATC	2 cut(s)	283, 559
MboII	GAAGA	6 cut(s)	94, 124, 308, 464, 475, 620
MluCI	AATT	3 cut(s)	213, 265, 477
MlyI	GAGTC	1 cut(s)	677
MnlI	CCTC	3 cut(s)	146, 172, 438
MseI	TTAA	6 cut(s)	216, 263, 269, 320, 458, 656
MslI	CAYNNNNRTG	1 cut(s)	521
MvnI	CGCG	2 cut(s)	60, 222
NdeII	GATC	2 cut(s)	283, 559
NlaIII	CATG	2 cut(s)	446, 680
NlaIV	GGNNCC	2 cut(s)	226, 353
NmuCI	GTSAC	1 cut(s)	580
PflFI	GACNNNGTC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
PshBI	ATTAAT	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	226, 353
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	2 cut(s)	426, 594
RsaNI	GTAC	2 cut(s)	425, 593
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	6 cut(s)	216, 263, 269, 320, 458, 656
Sau3AI	GATC	2 cut(s)	283, 559
SchI	GAGTC	1 cut(s)	677
SfaNI	GCATC	2 cut(s)	19, 143
SmiMI	CAYNNNNRTG	1 cut(s)	521
SpeI	ACTAGT	1 cut(s)	290
Sse9I	AATT	3 cut(s)	213, 265, 477
SsiI	CCGC	2 cut(s)	58, 222
SspMI	CTAG	2 cut(s)	291, 662
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	3 cut(s)	102, 183, 562
TaqII	GACCGA	1 cut(s)	291
TasI	AATT	3 cut(s)	213, 265, 477
Tru1I	TTAA	6 cut(s)	216, 263, 269, 320, 458, 656
Tru9I	TTAA	6 cut(s)	216, 263, 269, 320, 458, 656
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	580
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	5 cut(s)	17, 101, 126, 390, 665
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	498
Tth111I	GACNNNGTC	1 cut(s)	59
VspI	ATTAAT	1 cut(s)	216
XapI	RAATTY	2 cut(s)	265, 477
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	2 cut(s)	291, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.