Rw4G034300

Phosphoenolpyruvate carboxylase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
61442223 .. 61443903
1681 bp
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UTR
Exon/CDS
Intron
Rw4G034300.1

Sequence Viewer

Length: 321 bp
ATGCAGAGTGCTTGTAGTATGAGGCTGGCAGGGATGGAAGACACAGCGGAGCTGCTGGAGAAGAAGCTAGCGTCGGAAATTTCGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCCTGTTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGGGTTTGTAGACAAAAGAATGTAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCGTGGTGTTTCCCCAAACCAGCTTTACGATACTGTTTGCAAGCAGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATCTCGTAA

Protein Analysis

106

Amino Acids

12.05

Weight (kDa)

8.99

Isoelectric Point (pI)

65.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 178
AciI CCGC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 177
AluBI AGCT 5 cut(s) 52, 67, 93, 219, 249
AluI AGCT 5 cut(s) 52, 67, 93, 219, 249
AlwNI CAGNNNCTG 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 52, 225
ApoI RAATTY 1 cut(s) 78
AseI ATTAAT 1 cut(s) 311
AsuII TTCGAA 1 cut(s) 83
AsuNHI GCTAGC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 39, 237
BccI CCATC 2 cut(s) 28, 139
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 223
BisI GCNGC 2 cut(s) 53, 226
BlsI GCNGC 2 cut(s) 54, 227
BmtI GCTAGC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 77
Bpu14I TTCGAA 1 cut(s) 83
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bse3DI GCAATG 1 cut(s) 150
BseGI GGATG 2 cut(s) 39, 297
BseMI GCAATG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 39, 237
BsgI GTGCAG 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 83
BspACI CCGC 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 227
BspOI GCTAGC 1 cut(s) 71
BspT104I TTCGAA 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 261
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 27, 69, 268
BstDEI CTNAG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 39, 297
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 39, 237
BstV2I GAAGAC 1 cut(s) 45
BtsCI GGATG 2 cut(s) 39, 297
Cac8I GCNNGC 3 cut(s) 27, 69, 268
CaiI CAGNNNCTG 1 cut(s) 222
CseI GACGC 1 cut(s) 60
CviJI RGCY 7 cut(s) 25, 52, 67, 93, 129, 219, 249
CviKI_1 RGCY 7 cut(s) 25, 52, 67, 93, 129, 219, 249
DdeI CTNAG 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 177
FaiI YATR 1 cut(s) 20
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 53, 226
FokI GGATG 2 cut(s) 46, 284
Fsp4HI GCNGC 2 cut(s) 53, 226
FspBI CTAG 1 cut(s) 68
GluI GCNGC 2 cut(s) 53, 226
GsuI CTGGAG 1 cut(s) 77
HgaI GACGC 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4V TGCA 4 cut(s) 4, 225, 266, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 1 cut(s) 94
LmnI GCTCC 2 cut(s) 49, 121
LpnPI CCDG 7 cut(s) 11, 15, 41, 132, 154, 256, 259
Lsp1109I GCAGC 2 cut(s) 39, 237
MaeI CTAG 1 cut(s) 68
MboII GAAGA 3 cut(s) 50, 73, 97
MluCI AATT 3 cut(s) 78, 139, 308
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 5 cut(s) 15, 91, 94, 146, 267
MseI TTAA 2 cut(s) 212, 311
MspA1I CMGCKG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 225
NheI GCTAGC 1 cut(s) 67
NspV TTCGAA 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PkrI GCNGC 2 cut(s) 54, 227
PshBI ATTAAT 1 cut(s) 311
PstI CTGCAG 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 212, 311
SatI GCNGC 2 cut(s) 53, 226
SetI ASST 7 cut(s) 54, 69, 95, 138, 221, 251, 278
SfcI CTRYAG 1 cut(s) 223
SfuI TTCGAA 1 cut(s) 83
Sse9I AATT 3 cut(s) 78, 139, 308
SsiI CCGC 1 cut(s) 47
SspMI CTAG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 261
TaqI TCGA 2 cut(s) 83, 278
TasI AATT 3 cut(s) 78, 139, 308
Tru1I TTAA 2 cut(s) 212, 311
Tru9I TTAA 2 cut(s) 212, 311
TseI GCWGC 2 cut(s) 52, 225
TspDTI ATGAA 1 cut(s) 152
VspI ATTAAT 1 cut(s) 311
XapI RAATTY 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 178
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.