Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004305.1

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

37517 .. 41182

Gene Structure 3666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004305.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggaggacacggcggagctactggggaagaagctagcgtcggaaatttcgaagatgagcttagaggtgtcactcactctcgctcgtgctttcagccattacctcaatttgatgggcattgctgaagttcatcacagcttccgaaaagataacatgaaaaaacaaaaattgacaaaagaatgtgaatcttgtgatgatatttttaatcagcttctacagcgtggtgtttccccagaccagctttacgataccgtttgcaagcaggaggtcgagattgttcttactgcacatcctacacaaattaatcgcggaaccttacaatacaaacatatcagactttctcatcttttaaatttaagagaccgacctgatcttactagtgaagacagagatatggtgattgaagatctggtgcgagagataacttctgtatggcaaacagatgagcttaggcaccataaacccacaccagttgatgaagctggggcaggtttgaacattgtggagcagtccttttggaaagctgtacctcattatttatctcgtgtcagcaatgctttaaagaaggtttgtcttcaaattcgtttctgcacactgggaaacgggaaaaccacttccgttgaaatgcacaccaatcaggtttggctcttggatgggggtgatcgagatggaaatcccaatgtgacagcaaaggaatctggtagacatgctgaaacacttgatgcaattaccaaatatttggatatgggcacatacagtgagtgggctaaagataagaaactggaatttctaacaagagagctcaaaggaaaaaggaccgctagtcccatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

277

Amino Acids

31.56

Weight (kDa)

6.6

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	703
AccII	CGCG	1 cut(s)	309
AciI	CCGC	3 cut(s)	14, 309, 819
AcsI	RAATTY	4 cut(s)	45, 352, 579, 785
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	528
AgsI	TTSAA	4 cut(s)	404, 496, 578, 623
AhdI	GACNNNNNGTC	1 cut(s)	822
AhlI	ACTAGT	1 cut(s)	377
Alw21I	GWGCWC	1 cut(s)	804
Alw26I	GTCTC	1 cut(s)	354
ApoI	RAATTY	4 cut(s)	45, 352, 579, 785
AseI	ATTAAT	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	816
AsuHPI	GGTGA	2 cut(s)	409, 671
AsuII	TTCGAA	1 cut(s)	50
AsuNHI	GCTAGC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	816
BaeGI	GKGCMC	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	804
BauI	CACGAG	2 cut(s)	84, 543
BbsI	GAAGAC	2 cut(s)	390, 566
Bbv12I	GWGCWC	1 cut(s)	804
BccI	CCATC	3 cut(s)	106, 647, 662
BceAI	ACGGC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	354
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	4 cut(s)	35, 378, 822, 832
BfmI	CTRYAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	816
BmeRI	GACNNNNNGTC	1 cut(s)	822
BmgT120I	GGNCC	1 cut(s)	816
BmiI	GGNNCC	2 cut(s)	313, 455
BmrI	ACTGGG	2 cut(s)	32, 605
BmsI	GCATC	1 cut(s)	712
BmtI	GCTAGC	1 cut(s)	38
BmuI	ACTGGG	2 cut(s)	32, 605
BpiI	GAAGAC	2 cut(s)	390, 566
Bpu10I	CCTNAGC	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	354
Bse1I	ACTGG	4 cut(s)	27, 470, 600, 786
Bse3DI	GCAATG	2 cut(s)	117, 559
Bse8I	GATNNNNATC	1 cut(s)	672
BseGI	GGATG	2 cut(s)	289, 658
BseJI	GATNNNNATC	1 cut(s)	672
BseMI	GCAATG	2 cut(s)	117, 559
BseNI	ACTGG	4 cut(s)	27, 470, 600, 786
BseSI	GKGCMC	1 cut(s)	752
BseYI	CCCAGC	1 cut(s)	482
BsgI	GTGCAG	2 cut(s)	270, 574
Bsh1236I	CGCG	1 cut(s)	309
BshNI	GGYRCC	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	804
BslFI	GGGAC	1 cut(s)	810
BsmAI	GTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	810
Bso31I	GGTCTC	1 cut(s)	354
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	752, 804
Bsp143I	GATC	3 cut(s)	370, 406, 661
BspACI	CCGC	3 cut(s)	14, 309, 819
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	313, 455
BspMI	ACCTGC	1 cut(s)	479
BspOI	GCTAGC	1 cut(s)	38
BspT104I	TTCGAA	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	354
BsrDI	GCAATG	2 cut(s)	117, 559
BsrI	ACTGG	4 cut(s)	27, 470, 600, 786
BssMI	GATC	3 cut(s)	370, 406, 661
BssSI	CACGAG	2 cut(s)	84, 543
Bst2BI	CACGAG	2 cut(s)	84, 543
Bst4CI	ACNGT	2 cut(s)	253, 758
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	36, 260
BstDEI	CTNAG	2 cut(s)	61, 449
BstF5I	GGATG	2 cut(s)	289, 658
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	3 cut(s)	373, 409, 664
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	3 cut(s)	370, 406, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	710
BstSFI	CTRYAG	1 cut(s)	215
BstSLI	GKGCMC	1 cut(s)	752
BstUI	CGCG	1 cut(s)	309
BstV2I	GAAGAC	2 cut(s)	390, 566
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	289, 658
BtsIMutI	CAGTG	2 cut(s)	593, 763
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	36, 260
Cfr13I	GGNCC	1 cut(s)	816
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	527
CspCI	CAANNNNNGTGG	4 cut(s)	454, 489, 601, 636
CviAII	CATG	2 cut(s)	154, 707
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	2 cut(s)	61, 449
DpnI	GATC	3 cut(s)	372, 408, 663
DpnII	GATC	3 cut(s)	370, 406, 661
DraI	TTTAAA	2 cut(s)	351, 561
DriI	GACNNNNNGTC	1 cut(s)	822
Eam1105I	GACNNNNNGTC	1 cut(s)	822
EciI	GGCGGA	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	802
Eco24I	GRGCYC	1 cut(s)	804
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	816
Eco53kI	GAGCTC	1 cut(s)	802
Eco57I	CTGAAG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	802
EcoT38I	GRGCYC	1 cut(s)	804
FaeI	CATG	2 cut(s)	157, 710
FaiI	YATR	8 cut(s)	155, 330, 395, 433, 459, 708, 746, 754
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	810
FatI	CATG	2 cut(s)	153, 706
FblI	GTMKAC	1 cut(s)	703
FokI	GGATG	2 cut(s)	276, 665
FriOI	GRGCYC	1 cut(s)	804
FspBI	CTAG	4 cut(s)	35, 378, 822, 832
GsaI	CCCAGC	1 cut(s)	486
HgaI	GACGC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	157, 710
HinfI	GANTC	2 cut(s)	185, 695
HphI	GGTGA	2 cut(s)	409, 671
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	3 cut(s)	43, 143, 335
Hpy188III	TCNNGA	2 cut(s)	271, 665
Hpy8I	GTNNAC	1 cut(s)	704
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	559
HpyCH4III	ACNGT	2 cut(s)	253, 758
HpyCH4V	TGCA	5 cut(s)	258, 287, 591, 628, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	2 cut(s)	61, 449
Hsp92II	CATG	2 cut(s)	157, 710
Kzo9I	GATC	3 cut(s)	370, 406, 661
LmnI	GCTCC	2 cut(s)	16, 505
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	4 cut(s)	35, 378, 822, 832
MaeIII	GTNAC	2 cut(s)	69, 682
MalI	GATC	3 cut(s)	372, 408, 663
MboI	GATC	3 cut(s)	370, 406, 661
MboII	GAAGA	5 cut(s)	40, 64, 395, 416, 566
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	752, 804
MluCI	AATT	8 cut(s)	45, 106, 167, 300, 352, 579, 726, 785
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	4 cut(s)	58, 113, 259, 540
MseI	TTAA	5 cut(s)	204, 303, 350, 356, 560
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	3 cut(s)	370, 406, 661
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	157, 710
NlaIV	GGNNCC	2 cut(s)	313, 455
NmuCI	GTSAC	2 cut(s)	69, 682
NspI	RCATGY	1 cut(s)	710
NspV	TTCGAA	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	185, 695
PshBI	ATTAAT	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	804
PspFI	CCCAGC	1 cut(s)	482
PspN4I	GGNNCC	2 cut(s)	313, 455
PspPI	GGNCC	1 cut(s)	816
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	804
SaqAI	TTAA	5 cut(s)	204, 303, 350, 356, 560
Sau3AI	GATC	3 cut(s)	370, 406, 661
Sau96I	GGNCC	1 cut(s)	816
SduI	GDGCHC	2 cut(s)	752, 804
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	1 cut(s)	215
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	1 cut(s)	816
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	8 cut(s)	45, 106, 167, 300, 352, 579, 726, 785
SsiI	CCGC	3 cut(s)	14, 309, 819
SspI	AATATT	1 cut(s)	737
SspMI	CTAG	4 cut(s)	35, 378, 822, 832
SstI	GAGCTC	1 cut(s)	804
TaaI	ACNGT	2 cut(s)	253, 758
TaqI	TCGA	3 cut(s)	50, 270, 664
TaqII	GACCGA	1 cut(s)	378
TasI	AATT	8 cut(s)	45, 106, 167, 300, 352, 579, 726, 785
TfiI	GAWTC	2 cut(s)	185, 695
Tru1I	TTAA	5 cut(s)	204, 303, 350, 356, 560
Tru9I	TTAA	5 cut(s)	204, 303, 350, 356, 560
TscAI	CASTG	2 cut(s)	600, 763
TseFI	GTSAC	2 cut(s)	69, 682
Tsp45I	GTSAC	2 cut(s)	69, 682
TspDTI	ATGAA	3 cut(s)	119, 170, 492
TspGWI	ACGGA	1 cut(s)	607
TspRI	CASTG	2 cut(s)	600, 763
VpaK11BI	GGWCC	1 cut(s)	816
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	4 cut(s)	45, 352, 579, 785
XceI	RCATGY	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	703
XspI	CTAG	4 cut(s)	35, 378, 822, 832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.