Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

54099421 .. 54101630

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTTGTTTCGGGTCACAAAAGATGTCTCACTTTTATCTAGGTGGATAACTATTGATCTGTATATTCGAGAAGTTGAAAGCATGAAATTTGAACTATCCATGAATAAATGCAGCGATAGCTTGTCAAAAGTGGAGCAAGTTGCTTGCCCATTTTGCAGTGTTTCAGTCTACGATAGGTCACTACTCAGGTGCTTTTGGGGGTTTGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

70

Amino Acids

8.15

Weight (kDa)

7.64

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	77, 92
AluBI	AGCT	2 cut(s)	120, 210
AluI	AGCT	2 cut(s)	120, 210
Alw26I	GTCTC	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	198
BssMI	GATC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	185
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 153
BstV1I	GCAGC	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	145
CviAII	CATG	2 cut(s)	82, 100
CviJI	RGCY	2 cut(s)	120, 210
CviKI_1	RGCY	2 cut(s)	120, 210
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
FaeI	CATG	2 cut(s)	85, 103
FaiI	YATR	3 cut(s)	63, 83, 101
FatI	CATG	2 cut(s)	81, 99
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	85, 103
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	111, 156
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 153
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	85, 103
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	1 cut(s)	172
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	13, 177
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MluCI	AATT	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	117, 153
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	85, 103
NmuCI	GTSAC	2 cut(s)	13, 177
PkrI	GCNGC	1 cut(s)	113
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	55
SetI	ASST	5 cut(s)	44, 122, 179, 191, 212
SgeI	CNNG	9 cut(s)	23, 51, 80, 94, 112, 133, 149, 156, 199
Sse9I	AATT	1 cut(s)	86
SspMI	CTAG	1 cut(s)	39
TaqI	TCGA	1 cut(s)	67
TasI	AATT	1 cut(s)	86
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	2 cut(s)	13, 177
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	2 cut(s)	13, 177
TspDTI	ATGAA	2 cut(s)	98, 116
TspRI	CASTG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.