Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011378.1

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2496

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011378.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgacggacacgacggacgatatcgccgaggaaatctcgttccagagcttcgaagacgattgtaaaatgctcggcaatcttctcctggaggttttgcagcgagaagtcggagctcagatgagggagaaagtcgaccgctacagaaccctcgctcagagtgcttgtagtatgaggctagccgggatagagcacatggcggagctgctggagaagcagctagcgtcggacatttcgaatatgagcttagaggaggcactcactctcgctcgtgctttcggccattacctcaatttgatgggcattgctgaagttcatcatagggttcgtagacaaaagaatgtggcatccctatcaaaatcttgtgatgatattttttatcagcttctgcagcgtggagtttccccggaccagctttacgagactgtttgcaagcaggaggtcgagattgttcttactgcacatcctacacaaattaatcgccgaaccttacaatacaaacatatcaaactttctcatcttttagatttaaaagaccgacctgatcttactactgaagagagagatatggtgattgaagatatggtgcgagagattacttctatatggcagacagatgagcctaggcgccataaacccacaccagttgatgaagctagcgcaggtttgaacattgtggagcagtccctttggaaagttgtacctcattatttacgtcgtgtcagcaatgctttaaagaagcacactggaaaaccacttccactgaaatgcacaccaatcaggtttgggtcttggatggggggtgatagagatggaaatcccaatgtgacagcaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

278

Amino Acids

31.82

Weight (kDa)

6.22

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	624
AccI	GTMKAC	2 cut(s)	132, 328
AciI	CCGC	2 cut(s)	136, 197
AcoI	YGGCCR	1 cut(s)	277
AcuI	CTGAAG	2 cut(s)	327, 573
AcyI	GRCGYC	1 cut(s)	625
AfaI	GTAC	1 cut(s)	699
AgsI	TTSAA	2 cut(s)	575, 667
AjnI	CCWGG	1 cut(s)	84
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	8 cut(s)	48, 113, 202, 217, 243, 382, 412, 653
AluI	AGCT	8 cut(s)	48, 113, 202, 217, 243, 382, 412, 653
Alw21I	GWGCWC	2 cut(s)	115, 192
Alw26I	GTCTC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	385
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	4 cut(s)	97, 202, 214, 388
AseI	ATTAAT	1 cut(s)	474
AspA2I	CCTAGG	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	627, 659
AspS9I	GGNCC	1 cut(s)	406
AsuC2I	CCSGG	2 cut(s)	181, 404
AsuHPI	GGTGA	2 cut(s)	580, 812
AsuII	TTCGAA	2 cut(s)	51, 233
AsuNHI	GCTAGC	3 cut(s)	175, 217, 653
AvaII	GGWCC	1 cut(s)	406
AvrII	CCTAGG	1 cut(s)	620
BanI	GGYRCC	1 cut(s)	624
BanII	GRGCYC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	115, 192
BbvI	GCAGC	4 cut(s)	109, 189, 226, 400
BccI	CCATC	3 cut(s)	289, 787, 803
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	2 cut(s)	181, 404
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	4 cut(s)	176, 218, 621, 654
BfmI	CTRYAG	2 cut(s)	139, 386
BfoI	RGCGCY	1 cut(s)	628
BfuAI	ACCTGC	1 cut(s)	650
BisI	GCNGC	4 cut(s)	98, 203, 215, 389
BlnI	CCTAGG	1 cut(s)	620
BlsI	GCNGC	4 cut(s)	99, 204, 216, 390
Bme1390I	CCNGG	3 cut(s)	86, 181, 404
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	626
BmrFI	CCNGG	3 cut(s)	86, 181, 404
BmsI	GCATC	1 cut(s)	353
BmtI	GCTAGC	3 cut(s)	179, 221, 657
BpiI	GAAGAC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	2 cut(s)	107, 227
Bpu14I	TTCGAA	2 cut(s)	51, 233
BpuMI	CCSGG	2 cut(s)	181, 404
BsaBI	GATNNNNATC	1 cut(s)	813
BsaHI	GRCGYC	1 cut(s)	625
BsaJI	CCNNGG	3 cut(s)	27, 402, 620
Bse1I	ACTGG	2 cut(s)	641, 748
Bse3DI	GCAATG	2 cut(s)	300, 730
Bse8I	GATNNNNATC	1 cut(s)	813
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	3 cut(s)	27, 402, 620
BseGI	GGATG	3 cut(s)	344, 460, 798
BseJI	GATNNNNATC	1 cut(s)	813
BseMI	GCAATG	2 cut(s)	300, 730
BseMII	CTCAG	2 cut(s)	128, 167
BseNI	ACTGG	2 cut(s)	641, 748
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	4 cut(s)	109, 189, 226, 400
BsgI	GTGCAG	1 cut(s)	441
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	624
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	115, 192
BsiSI	CCGG	2 cut(s)	180, 404
BslFI	GGGAC	1 cut(s)	667
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	667
BsnI	GGCC	1 cut(s)	279
Bsp119I	TTCGAA	2 cut(s)	51, 233
Bsp1286I	GDGCHC	2 cut(s)	115, 192
Bsp143I	GATC	1 cut(s)	541
BspACI	CCGC	2 cut(s)	136, 197
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	127, 166
BspLI	GGNNCC	1 cut(s)	626
BspMAI	CTGCAG	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	650
BspOI	GCTAGC	3 cut(s)	179, 221, 657
BspT104I	TTCGAA	2 cut(s)	51, 233
BspT107I	GGYRCC	1 cut(s)	624
BsrDI	GCAATG	2 cut(s)	300, 730
BsrI	ACTGG	2 cut(s)	641, 748
BssECI	CCNNGG	3 cut(s)	27, 402, 620
BssMI	GATC	1 cut(s)	541
BssNI	GRCGYC	1 cut(s)	625
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	620
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	625
BstBI	TTCGAA	2 cut(s)	51, 233
BstC8I	GCNNGC	4 cut(s)	177, 219, 431, 655
BstDEI	CTNAG	3 cut(s)	114, 153, 244
BstF5I	GGATG	3 cut(s)	344, 460, 798
BstH2I	RGCGCY	1 cut(s)	628
BstHHI	GCGC	2 cut(s)	627, 659
BstKTI	GATC	1 cut(s)	544
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	1 cut(s)	541
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 211, 388
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	3 cut(s)	84, 179, 402
BstSFI	CTRYAG	2 cut(s)	139, 386
BstV1I	GCAGC	4 cut(s)	109, 189, 226, 400
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	344, 460, 798
BtsIMutI	CAGTG	2 cut(s)	741, 758
BveI	ACCTGC	1 cut(s)	650
Cac8I	GCNNGC	4 cut(s)	177, 219, 431, 655
CaiI	CAGNNNCTG	1 cut(s)	385
CfoI	GCGC	2 cut(s)	627, 659
Cfr13I	GGNCC	1 cut(s)	406
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	698
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	3 cut(s)	114, 153, 244
DinI	GGCGCC	1 cut(s)	626
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
DraI	TTTAAA	2 cut(s)	528, 732
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	406
Eco53kI	GAGCTC	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	327, 573
EcoICRI	GAGCTC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	84
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	620
EcoT38I	GRGCYC	1 cut(s)	115
EgeI	GGCGCC	1 cut(s)	626
EheI	GGCGCC	1 cut(s)	626
ErhI	CCWWGG	1 cut(s)	620
FaeI	CATG	1 cut(s)	196
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	1 cut(s)	192
FblI	GTMKAC	2 cut(s)	132, 328
Fnu4HI	GCNGC	4 cut(s)	98, 203, 215, 389
FokI	GGATG	3 cut(s)	331, 447, 805
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	4 cut(s)	98, 203, 215, 389
FspBI	CTAG	4 cut(s)	176, 218, 621, 654
GlaI	GCGC	2 cut(s)	626, 658
GluI	GCNGC	4 cut(s)	98, 203, 215, 389
GsuI	CTGGAG	2 cut(s)	107, 227
HaeII	RGCGCY	1 cut(s)	628
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	180, 404
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	2 cut(s)	627, 659
Hin1I	GRCGYC	1 cut(s)	625
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	2 cut(s)	625, 657
HinP1I	GCGC	2 cut(s)	625, 657
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HpaII	CCGG	2 cut(s)	180, 404
HphI	GGTGA	2 cut(s)	580, 812
Hpy166II	GTNNAC	2 cut(s)	133, 329
Hpy188I	TCNGA	4 cut(s)	110, 117, 156, 226
Hpy188III	TCNNGA	2 cut(s)	43, 442
Hpy8I	GTNNAC	2 cut(s)	133, 329
Hpy99I	CGWCG	3 cut(s)	16, 226, 717
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	712
HpyCH4V	TGCA	5 cut(s)	97, 388, 429, 458, 768
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 211, 388
HpyF3I	CTNAG	3 cut(s)	114, 153, 244
HpySE526I	ACGT	1 cut(s)	712
Hsp92I	GRCGYC	1 cut(s)	625
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	2 cut(s)	625, 657
KasI	GGCGCC	1 cut(s)	624
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	3 cut(s)	110, 199, 676
Lsp1109I	GCAGC	4 cut(s)	109, 189, 226, 400
LweI	GCATC	1 cut(s)	353
MaeI	CTAG	4 cut(s)	176, 218, 621, 654
MaeII	ACGT	1 cut(s)	712
MaeIII	GTNAC	1 cut(s)	823
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	4 cut(s)	65, 71, 566, 587
MhlI	GDGCHC	2 cut(s)	115, 192
MluCI	AATT	2 cut(s)	289, 471
Mly113I	GGCGCC	1 cut(s)	625
MmeI	TCCRAC	2 cut(s)	88, 204
MseI	TTAA	3 cut(s)	474, 527, 731
MslI	CAYNNNNRTG	1 cut(s)	763
MspI	CCGG	2 cut(s)	180, 404
MspR9I	CCNGG	3 cut(s)	86, 181, 404
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	158, 211, 388
NarI	GGCGCC	1 cut(s)	625
NciI	CCSGG	2 cut(s)	181, 404
NdeII	GATC	1 cut(s)	541
NheI	GCTAGC	3 cut(s)	175, 217, 653
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	626
NmeAIII	GCCGAG	2 cut(s)	51, 52
NmuCI	GTSAC	1 cut(s)	823
NspV	TTCGAA	2 cut(s)	51, 233
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 230
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	4 cut(s)	99, 204, 216, 390
PluTI	GGCGCC	1 cut(s)	628
PshBI	ATTAAT	1 cut(s)	474
Psp124BI	GAGCTC	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	626
PspPI	GGNCC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
RseI	CAYNNNNRTG	1 cut(s)	763
SacI	GAGCTC	1 cut(s)	115
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	474, 527, 731
SatI	GCNGC	4 cut(s)	98, 203, 215, 389
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	1 cut(s)	406
ScrFI	CCNGG	3 cut(s)	86, 181, 404
SduI	GDGCHC	2 cut(s)	115, 192
SfaNI	GCATC	1 cut(s)	353
SfcI	CTRYAG	2 cut(s)	139, 386
SfoI	GGCGCC	1 cut(s)	626
SfuI	TTCGAA	2 cut(s)	51, 233
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	763
Sse9I	AATT	2 cut(s)	289, 471
SsiI	CCGC	2 cut(s)	136, 197
SspDI	GGCGCC	1 cut(s)	624
SspMI	CTAG	4 cut(s)	176, 218, 621, 654
SstI	GAGCTC	1 cut(s)	115
StyD4I	CCNGG	3 cut(s)	84, 179, 402
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	1 cut(s)	715
TaqI	TCGA	4 cut(s)	51, 132, 233, 441
TaqII	GACCGA	1 cut(s)	549
TasI	AATT	2 cut(s)	289, 471
Tru1I	TTAA	3 cut(s)	474, 527, 731
Tru9I	TTAA	3 cut(s)	474, 527, 731
TscAI	CASTG	2 cut(s)	748, 765
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	4 cut(s)	97, 202, 214, 388
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	2 cut(s)	302, 663
TspGWI	ACGGA	2 cut(s)	20, 29
TspRI	CASTG	2 cut(s)	748, 765
VpaK11BI	GGWCC	1 cut(s)	406
VspI	ATTAAT	1 cut(s)	474
XmaJI	CCTAGG	1 cut(s)	620
XmiI	GTMKAC	2 cut(s)	132, 328
XspI	CTAG	4 cut(s)	176, 218, 621, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.