Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

48226743 .. 48231098

Gene Structure 4356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAGGCTGGCAGGGATGGAGGACACGGCGGAGCTGCTGGAGAAGAAGCTAGCGTCGGAAATTTCGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCCTGTTTTCAGCCATCACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGGGTTTGTAGACAAAAGAATGTAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCGTGGTGTTTCCCCAGACCAGCTTTACGATACTGTTTGCAAGCAGGTTGGAGGTCGAGATTGTTCTTACTGCACATCCTACACAAATTAATCGCGGAACTTTACAATACAAATATATCAGACTTTCTCATCTTTTAAATTTAAGAGACCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCTGGTGCAAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGTTGATGAAGCTGGGGCAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTATGTCATCTCAGCAATGCTTTAAAGAAGGTTTGTCTTCAAATTCCACACTGGGAAATTGGAAAACCACTTCCATTGAAATGCACACCAATCAGGTTTGGCTCTTGGATGGGGGGTGGTCGAGATGGAAATTCCAATGTGACAGCAAAGGTCACAAAAGATGTCTCGCTTTTATCTAGGTGGATGACTATTGATCTCTATATTAGAGAAGTGGATAGCCTGAAATTTGAACTATCCATGAATTGGTGCAGTAATAGCTTGTCAAAACTGGCACAGGAGATTCTAGAGCACAGTATGACATATTGCAGTTATTTTCAGTGGTCATTAATATTGGCTGCTTGGTATCATGTGGAGACTACCAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

299

Amino Acids

34.2

Weight (kDa)

6.5

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	13 - 270	3.1e-58	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	243, 473
AccB1I	GGYRCC	1 cut(s)	447
AccB7I	CCANNNNNTGG	1 cut(s)	774
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	1 cut(s)	303
AciI	CCGC	2 cut(s)	29, 303
AcsI	RAATTY	5 cut(s)	60, 346, 573, 661, 755
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	1 cut(s)	774
AgsI	TTSAA	5 cut(s)	398, 490, 572, 610, 761
AhlI	ACTAGT	1 cut(s)	371
AluBI	AGCT	9 cut(s)	34, 49, 75, 201, 231, 442, 476, 518, 789
AluI	AGCT	9 cut(s)	34, 49, 75, 201, 231, 442, 476, 518, 789
Alw21I	GWGCWC	1 cut(s)	822
Alw26I	GTCTC	3 cut(s)	348, 700, 878
AlwNI	CAGNNNCTG	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	34, 207, 866
ApoI	RAATTY	5 cut(s)	60, 346, 573, 661, 755
AseI	ATTAAT	2 cut(s)	297, 857
AsuHPI	GGTGA	2 cut(s)	107, 403
AsuII	TTCGAA	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	447
BbsI	GAAGAC	2 cut(s)	384, 560
Bbv12I	GWGCWC	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	21, 219, 853
BccI	CCATC	5 cut(s)	10, 120, 121, 634, 650
BceAI	ACGGC	1 cut(s)	42
BcoDI	GTCTC	3 cut(s)	348, 700, 878
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	4 cut(s)	50, 372, 708, 815
BfmI	CTRYAG	1 cut(s)	205
BfuAI	ACCTGC	2 cut(s)	243, 473
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	3 cut(s)	35, 208, 867
BlsI	GCNGC	3 cut(s)	36, 209, 868
BmiI	GGNNCC	1 cut(s)	449
BmrI	ACTGGG	1 cut(s)	592
BmtI	GCTAGC	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	592
BpiI	GAAGAC	2 cut(s)	384, 560
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	443
Bpu14I	TTCGAA	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	774
Bse1I	ACTGG	3 cut(s)	464, 587, 804
Bse3DI	GCAATG	2 cut(s)	132, 553
BseGI	GGATG	4 cut(s)	21, 283, 645, 720
BseLI	CCNNNNNNNGG	1 cut(s)	774
BseMI	GCAATG	2 cut(s)	132, 553
BseMII	CTCAG	1 cut(s)	556
BseNI	ACTGG	3 cut(s)	464, 587, 804
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	21, 219, 853
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	2 cut(s)	264, 799
Bsh1236I	CGCG	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	822
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	774
BsmAI	GTCTC	3 cut(s)	348, 700, 878
BsmFI	GGGAC	1 cut(s)	490
Bso31I	GGTCTC	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	822
Bsp143I	GATC	3 cut(s)	364, 400, 724
BspACI	CCGC	2 cut(s)	29, 303
BspCNI	CTCAG	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	449
BspMAI	CTGCAG	1 cut(s)	209
BspMI	ACCTGC	2 cut(s)	243, 473
BspOI	GCTAGC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	2 cut(s)	132, 553
BsrI	ACTGG	3 cut(s)	464, 587, 804
BssMI	GATC	3 cut(s)	364, 400, 724
Bst4CI	ACNGT	2 cut(s)	243, 824
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	9, 51, 250
BstDEI	CTNAG	3 cut(s)	76, 443, 542
BstF5I	GGATG	4 cut(s)	21, 283, 645, 720
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	3 cut(s)	367, 403, 727
BstMAI	GTCTC	3 cut(s)	348, 700, 878
BstMBI	GATC	3 cut(s)	364, 400, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 786
BstSFI	CTRYAG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	21, 219, 853
BstV2I	GAAGAC	2 cut(s)	384, 560
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BtsCI	GGATG	4 cut(s)	21, 283, 645, 720
BtsIMutI	CAGTG	2 cut(s)	580, 854
BveI	ACCTGC	2 cut(s)	243, 473
Cac8I	GCNNGC	3 cut(s)	9, 51, 250
CaiI	CAGNNNCTG	1 cut(s)	204
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	521
CspCI	CAANNNNNGTGG	4 cut(s)	448, 483, 588, 623
CviAII	CATG	2 cut(s)	769, 878
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	3 cut(s)	76, 443, 542
DpnI	GATC	3 cut(s)	366, 402, 726
DpnII	GATC	3 cut(s)	364, 400, 724
DraI	TTTAAA	2 cut(s)	345, 555
EciI	GGCGGA	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	159
FaeI	CATG	2 cut(s)	772, 881
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	2 cut(s)	768, 877
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	35, 208, 867
FokI	GGATG	4 cut(s)	28, 270, 652, 727
Fsp4HI	GCNGC	3 cut(s)	35, 208, 867
FspBI	CTAG	4 cut(s)	50, 372, 708, 815
GluI	GCNGC	3 cut(s)	35, 208, 867
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	772, 881
HinfI	GANTC	1 cut(s)	811
HphI	GGTGA	2 cut(s)	107, 403
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	58, 329
Hpy188III	TCNNGA	3 cut(s)	265, 653, 815
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	2 cut(s)	243, 824
HpyCH4V	TGCA	7 cut(s)	207, 248, 281, 409, 615, 780, 837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 786
HpyF3I	CTNAG	3 cut(s)	76, 443, 542
Hsp92II	CATG	2 cut(s)	772, 881
Kzo9I	GATC	3 cut(s)	364, 400, 724
LmnI	GCTCC	3 cut(s)	31, 103, 499
Lsp1109I	GCAGC	3 cut(s)	21, 219, 853
MaeI	CTAG	4 cut(s)	50, 372, 708, 815
MaeIII	GTNAC	2 cut(s)	670, 682
MalI	GATC	3 cut(s)	366, 402, 726
MboI	GATC	3 cut(s)	364, 400, 724
MboII	GAAGA	5 cut(s)	55, 79, 389, 410, 560
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	822
MluCI	AATT	9 cut(s)	60, 121, 294, 346, 573, 588, 661, 755, 772
MmeI	TCCRAC	2 cut(s)	36, 237
MnlI	CCTC	6 cut(s)	13, 73, 76, 128, 253, 534
MseI	TTAA	6 cut(s)	194, 297, 344, 350, 554, 857
MslI	CAYNNNNRTG	1 cut(s)	610
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	207, 786
NdeII	GATC	3 cut(s)	364, 400, 724
NheI	GCTAGC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	772, 881
NlaIV	GGNNCC	1 cut(s)	449
NmuCI	GTSAC	2 cut(s)	670, 682
NspV	TTCGAA	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	811
PflMI	CCANNNNNTGG	1 cut(s)	774
PkrI	GCNGC	3 cut(s)	36, 209, 868
PshBI	ATTAAT	2 cut(s)	297, 857
PspFI	CCCAGC	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	610
SaqAI	TTAA	6 cut(s)	194, 297, 344, 350, 554, 857
SatI	GCNGC	3 cut(s)	35, 208, 867
Sau3AI	GATC	3 cut(s)	364, 400, 724
SduI	GDGCHC	1 cut(s)	822
SfcI	CTRYAG	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	610
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	9 cut(s)	60, 121, 294, 346, 573, 588, 661, 755, 772
SsiI	CCGC	2 cut(s)	29, 303
SspI	AATATT	1 cut(s)	861
SspMI	CTAG	4 cut(s)	50, 372, 708, 815
TaaI	ACNGT	2 cut(s)	243, 824
TaqI	TCGA	3 cut(s)	65, 264, 652
TaqII	GACCGA	1 cut(s)	372
TasI	AATT	9 cut(s)	60, 121, 294, 346, 573, 588, 661, 755, 772
TfiI	GAWTC	1 cut(s)	811
Tru1I	TTAA	6 cut(s)	194, 297, 344, 350, 554, 857
Tru9I	TTAA	6 cut(s)	194, 297, 344, 350, 554, 857
TscAI	CASTG	2 cut(s)	587, 854
TseFI	GTSAC	2 cut(s)	670, 682
TseI	GCWGC	3 cut(s)	34, 207, 866
Tsp45I	GTSAC	2 cut(s)	670, 682
TspDTI	ATGAA	3 cut(s)	134, 486, 785
TspRI	CASTG	2 cut(s)	587, 854
Van91I	CCANNNNNTGG	1 cut(s)	774
VspI	ATTAAT	2 cut(s)	297, 857
XapI	RAATTY	5 cut(s)	60, 346, 573, 661, 755
XbaI	TCTAGA	1 cut(s)	814
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	4 cut(s)	50, 372, 708, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.