Rroxscaffold_2G00125020

phosphoenolpyruvate carboxylase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
59566923 .. 59569513
2591 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00125020.1

Sequence Viewer

Length: 294 bp
ATGCAGAGTGCTTGTAGTATGAGGCTGGCGGGGATGGAGGACACGGCAGAGCTGCTGGAGAAGAAGCAAGCGTTGGAAATTTCGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCCTGCTTTCAGCCATTACCTCAATTTGATGGGCATTGCTAAAGTTCATCACAGGTCACTGAACGACTTGGGAAAAAAAAAAAAAAAAAAAGGGGTTAAATTGCATATATCTCTTAGTGACATATTTTACAACCAATCGACTCTTGCTTGCTTCATCATCAGTAGTAGCAACTCTTAA

Protein Analysis

97

Amino Acids

10.74

Weight (kDa)

9.2

Isoelectric Point (pI)

62.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AcsI RAATTY 1 cut(s) 78
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 2 cut(s) 52, 93
AluI AGCT 2 cut(s) 52, 93
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 78
AsuII TTCGAA 1 cut(s) 83
BbvI GCAGC 1 cut(s) 39
BccI CCATC 2 cut(s) 28, 139
BceAI ACGGC 1 cut(s) 60
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 77
Bpu14I TTCGAA 1 cut(s) 83
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bse3DI GCAATG 1 cut(s) 150
BseGI GGATG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 39
Bsp119I TTCGAA 1 cut(s) 83
BspACI CCGC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 150
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 27, 69, 265
BstDEI CTNAG 2 cut(s) 94, 230
BstF5I GGATG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 3 cut(s) 27, 69, 265
CviJI RGCY 4 cut(s) 25, 52, 93, 129
CviKI_1 RGCY 4 cut(s) 25, 52, 93, 129
DdeI CTNAG 2 cut(s) 94, 230
FaiI YATR 4 cut(s) 20, 222, 224, 239
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 77
HinfI GANTC 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 4, 220
HpyF3I CTNAG 2 cut(s) 94, 230
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 4 cut(s) 11, 41, 132, 154
Lsp1109I GCAGC 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 171, 233
MboII GAAGA 2 cut(s) 73, 97
MluCI AATT 3 cut(s) 78, 139, 215
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 5 cut(s) 15, 31, 91, 94, 146
MseI TTAA 2 cut(s) 213, 292
NmuCI GTSAC 2 cut(s) 171, 233
NspV TTCGAA 1 cut(s) 83
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
SaqAI TTAA 2 cut(s) 213, 292
SatI GCNGC 1 cut(s) 53
SchI GAGTC 1 cut(s) 250
SetI ASST 4 cut(s) 54, 95, 138, 173
SfuI TTCGAA 1 cut(s) 83
Sse9I AATT 3 cut(s) 78, 139, 215
SsiI CCGC 1 cut(s) 29
TaqI TCGA 2 cut(s) 83, 254
TasI AATT 3 cut(s) 78, 139, 215
Tru1I TTAA 2 cut(s) 213, 292
Tru9I TTAA 2 cut(s) 213, 292
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 2 cut(s) 171, 233
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 2 cut(s) 171, 233
TspDTI ATGAA 2 cut(s) 152, 259
TspRI CASTG 1 cut(s) 180
XapI RAATTY 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.