Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

30085443 .. 30090772

Gene Structure 5330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG276700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGGCTGGCAGGGATGGAGGACACGGCGGAGCTGTTGGAGAAGAAGCTAGCGTCGGAAATTTTGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGCTTTCAACCATTACCTCAATTTGATGGGCATTGCTGAAGCTCATCACAGGGTTCGTAGACAAAAGAATGTGGCATCCCTATCAAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCATTGTGTTTCCCCAGACCAGCTTACTATACCATTTGCAAGCAGGTTGGTGCGAGAGATACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGGTGACGAAGCTAAGGCAGGCAAGTGACATCCTTGCTGTGGAGCTTATGCAAAAAGATGCACGACTTGCCGTTAGTGGAGAGATAGGAAAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

141

Amino Acids

15.79

Weight (kDa)

8.62

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	13 - 91	7.3e-09	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	331
AfiI	CCNNNNNNNGG	2 cut(s)	328, 367
AgsI	TTSAA	2 cut(s)	67, 109
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	9 cut(s)	34, 49, 75, 143, 214, 244, 306, 340, 373
AluI	AGCT	9 cut(s)	34, 49, 75, 143, 214, 244, 306, 340, 373
AlwNI	CAGNNNCTG	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	343
AsuNHI	GCTAGC	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	272, 305
BanI	GGYRCC	1 cut(s)	311
BauI	CACGAG	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	2 cut(s)	10, 121
BceAI	ACGGC	3 cut(s)	42, 383, 406
BciT130I	CCWGG	1 cut(s)	329
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	2 cut(s)	185, 376
BmtI	GCTAGC	1 cut(s)	53
Bpu10I	CCTNAGC	2 cut(s)	307, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 367
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	329
BseGI	GGATG	3 cut(s)	21, 176, 357
BseLI	CCNNNNNNNGG	2 cut(s)	328, 367
BseMI	GCAATG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	328, 367
BspACI	CCGC	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	313
BspMAI	CTGCAG	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	132
BssSI	CACGAG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	4 cut(s)	9, 51, 262, 348
BstDEI	CTNAG	3 cut(s)	76, 307, 341
BstF5I	GGATG	3 cut(s)	21, 176, 357
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 395
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	21, 176, 357
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	4 cut(s)	9, 51, 262, 348
CaiI	CAGNNNCTG	1 cut(s)	217
CseI	GACGC	1 cut(s)	42
CsiI	ACCWGGT	1 cut(s)	327
DdeI	CTNAG	3 cut(s)	76, 307, 341
DraIII	CACNNNGTG	1 cut(s)	331
EciI	GGCGGA	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	327
FaiI	YATR	4 cut(s)	251, 291, 317, 377
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	3 cut(s)	28, 163, 344
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	221
HgaI	GACGC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	220, 260, 379, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 395
HpyF3I	CTNAG	3 cut(s)	76, 307, 341
LmnI	GCTCC	2 cut(s)	31, 370
LpnPI	CCDG	7 cut(s)	136, 249, 250, 254, 314, 332, 341
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	2 cut(s)	185, 376
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	331, 353
MboII	GAAGA	2 cut(s)	55, 79
MluCI	AATT	2 cut(s)	60, 121
MmeI	TCCRAC	2 cut(s)	18, 36
MnlI	CCTC	4 cut(s)	13, 73, 76, 128
MseI	TTAA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	220, 395
NheI	GCTAGC	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	331, 353
PkrI	GCNGC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	329
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	2 cut(s)	185, 376
SfcI	CTRYAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	60, 121
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	327
TasI	AATT	2 cut(s)	60, 121
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	2 cut(s)	331, 353
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	2 cut(s)	331, 353
XapI	RAATTY	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.