Rw6G007260

Phosphoenolpyruvate carboxylase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
11920210 .. 11921197
988 bp
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UTR
Exon/CDS
Intron
Rw6G007260.1

Sequence Viewer

Length: 300 bp
ATGCAGAGTGCTTGTAGTATGAGGCTGGCGGGGATGGAGGACACGGTGGAGCTGCTGGAGAAGAAGCAAGCGTCGGAAATTTCAAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGCTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGTTCACAGGTCACTGAACGACCTGGGGAAAAAAAAATGGTTAAATTTCATATATCTCTTAGTGACATATTTTACAACCAATCGACTCTTGCTTGCTTCATCATCAGTAGTAGCAACTCTTAATCCCCAATCTATGAATTAA

Protein Analysis

99

Amino Acids

11.13

Weight (kDa)

7.89

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AcsI RAATTY 2 cut(s) 78, 202
AcuI CTGAAG 1 cut(s) 177
AgsI TTSAA 1 cut(s) 84
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 52, 93
AluI AGCT 2 cut(s) 52, 93
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 2 cut(s) 78, 202
BauI CACGAG 1 cut(s) 117
BbvI GCAGC 1 cut(s) 39
BccI CCATC 2 cut(s) 28, 139
BciT130I CCWGG 1 cut(s) 182
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 39
BspACI CCGC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 181
BssSI CACGAG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 3 cut(s) 27, 69, 252
BstDEI CTNAG 2 cut(s) 94, 217
BstF5I GGATG 1 cut(s) 39
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 3 cut(s) 27, 69, 252
CseI GACGC 1 cut(s) 60
CviJI RGCY 4 cut(s) 25, 52, 93, 129
CviKI_1 RGCY 4 cut(s) 25, 52, 93, 129
DdeI CTNAG 2 cut(s) 94, 217
Eco57I CTGAAG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 180
FaiI YATR 5 cut(s) 20, 209, 211, 226, 293
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 77
HgaI GACGC 1 cut(s) 60
HinfI GANTC 1 cut(s) 243
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 94, 217
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 5 cut(s) 11, 41, 151, 167, 194
Lsp1109I GCAGC 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 168, 220
MboII GAAGA 1 cut(s) 73
MluCI AATT 4 cut(s) 78, 139, 202, 295
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 5 cut(s) 15, 31, 91, 94, 146
MseI TTAA 3 cut(s) 200, 279, 298
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 168, 220
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 200, 279, 298
SatI GCNGC 1 cut(s) 53
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 182
SetI ASST 5 cut(s) 54, 95, 138, 170, 183
Sse9I AATT 4 cut(s) 78, 139, 202, 295
SsiI CCGC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 241
TasI AATT 4 cut(s) 78, 139, 202, 295
Tru1I TTAA 3 cut(s) 200, 279, 298
Tru9I TTAA 3 cut(s) 200, 279, 298
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 2 cut(s) 168, 220
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 2 cut(s) 168, 220
TspDTI ATGAA 2 cut(s) 196, 246
TspRI CASTG 1 cut(s) 177
XapI RAATTY 2 cut(s) 78, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.