Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Forward (+)

2336230 .. 2337653

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026351

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGTTTTCAGCCGTTACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGGGTTCATAGACAAAAGAATGTGGAATCCCTATCAAAATCTTGTGATGATATTTTTAATGAGCTTCTGCAGCGTGATGTTTCCCCAGACCAGCTTTACGATACCGTTTGCAAGCAGGAGGTCGAGATTGCTCTTACTGCACATCCTACACAAATTAATCGCGGAACCTTACAATACAAACATATCAGACTTTTTCATCTTTTAAATTTAAGAGATCGACCTGATCTTACTAGTGAAGACAGAGATATGGTGATTGAAGATCAGGTGCGAGAGATAACTTCTGTATGGCAAACAGATGAGCTTAGGCACTATAAACCCACACCAGTTGATGAAGCTAGGGCAGGTTGGAACATTGTGGAGCAGTCCCTTGGAAAGCTGTACCTCATTATTTACGTCGTGTCAGCAATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

165

Amino Acids

19.16

Weight (kDa)

5.62

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	1 - 150	1.2e-33	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	413
AccII	CGCG	1 cut(s)	243
AciI	CCGC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	1 cut(s)	461
AgsI	TTSAA	1 cut(s)	338
AhlI	ACTAGT	1 cut(s)	311
AluBI	AGCT	6 cut(s)	6, 145, 175, 382, 416, 457
AluI	AGCT	6 cut(s)	6, 145, 175, 382, 416, 457
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	286
AseI	ATTAAT	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	343
BauI	CACGAG	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	27
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	2 cut(s)	312, 417
BfmI	CTRYAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	413
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	404
Bse3DI	GCAATG	2 cut(s)	63, 492
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	223
BseMI	GCAATG	2 cut(s)	63, 492
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	295, 304, 340
BspACI	CCGC	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	413
BsrDI	GCAATG	2 cut(s)	63, 492
BsrI	ACTGG	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	3 cut(s)	295, 304, 340
BssSI	CACGAG	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	448
Bst2BI	CACGAG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	7, 383
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	3 cut(s)	298, 307, 343
BstMBI	GATC	3 cut(s)	295, 304, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 218
BstSFI	CTRYAG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	460
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviJI	RGCY	7 cut(s)	6, 42, 145, 175, 382, 416, 457
CviKI_1	RGCY	7 cut(s)	6, 42, 145, 175, 382, 416, 457
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	2 cut(s)	7, 383
DpnI	GATC	3 cut(s)	297, 306, 342
DpnII	GATC	3 cut(s)	295, 304, 340
DraI	TTTAAA	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaiI	YATR	5 cut(s)	90, 264, 329, 367, 393
FaqI	GGGAC	1 cut(s)	430
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	2 cut(s)	312, 417
GluI	GCNGC	1 cut(s)	152
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	479
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	3 cut(s)	151, 192, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 218
HpyF3I	CTNAG	2 cut(s)	7, 383
HpySE526I	ACGT	1 cut(s)	474
Kzo9I	GATC	3 cut(s)	295, 304, 340
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	8 cut(s)	67, 180, 182, 185, 315, 329, 408, 417
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	312, 417
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	297, 306, 342
MboI	GATC	3 cut(s)	295, 304, 340
MboII	GAAGA	2 cut(s)	329, 350
MluCI	AATT	3 cut(s)	52, 234, 286
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	5 cut(s)	4, 7, 59, 193, 473
MseI	TTAA	5 cut(s)	138, 237, 284, 290, 493
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	151, 218
NdeII	GATC	3 cut(s)	295, 304, 340
NlaIV	GGNNCC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	153
PshBI	ATTAAT	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	153
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SaqAI	TTAA	5 cut(s)	138, 237, 284, 290, 493
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	3 cut(s)	295, 304, 340
SfcI	CTRYAG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	3 cut(s)	52, 234, 286
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	2 cut(s)	312, 417
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	2 cut(s)	204, 298
TasI	AATT	3 cut(s)	52, 234, 286
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	5 cut(s)	138, 237, 284, 290, 493
Tru9I	TTAA	5 cut(s)	138, 237, 284, 290, 493
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	65, 77, 266, 426
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	1 cut(s)	286
XspI	CTAG	2 cut(s)	312, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.