Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001048

Physical Location & Seq

Genomic Coordinates Reverse (-)

59200924 .. 59203238

Gene Structure 2315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG276000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTGGCATCCCTATCAAAATCTTGTGAGTGATGGTACTTTTAATCAGCTTCTGCAGCGTGGTGTTTCCTCAGACCAGCTTTACGATGCAGACAGAGATAGGTTGATTGAAGATCTGGTGCGAGATATAACTTATATATGGCAGACAGATGAGCTTAGACGCCATAAACCCACACCAGTTGATGAAGCTAGGGTAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTACATCGTGTCAGCAATAAAGAAGTCTTGGCTTGTCTAAATTTTGGAGAAGAGGAGAGTCAGGAGATCATTGTCACCATTATTAAGATGGAGCCACATATTTTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

117

Amino Acids

13.8

Weight (kDa)

5.1

Isoelectric Point (pI)

70.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	16 - 88	5.5e-15	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001048)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330341 RchiOBHm_Chr1g0336151 RchiOBHm_Chr1g0355571 RchiOBHm_Chr1g0379921 RchiOBHm_Chr2g0118311 RchiOBHm_Chr2g0135891 RchiOBHm_Chr2g0155351 RchiOBHm_Chr2g0155371 RchiOBHm_Chr4g0394861 RchiOBHm_Chr4g0407121 RchiOBHm_Chr5g0035481 RchiOBHm_Chr5g0035671 RchiOBHm_Chr5g0035831 RchiOBHm_Chr5g0063711 RchiOBHm_Chr6g0312321 RchiOBHm_Chr7g0200221
rosa_laevigata	RLG00000009003 RLG00000018408 RLG00000023915 RLG00000026351
rosa_multiflora	Rmu_co8334137.1_g000001 Rmu_sc0000084.1_g000018 Rmu_sc0002935.1_g000015 Rmu_sc0004184.1_g000022 Rmu_sc0004305.1_g000014 Rmu_sc0004950.1_g000010 Rmu_sc0005795.1_g000005 Rmu_sc0011378.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009990 Rroxscaffold_1G00028430 Rroxscaffold_1G00037070 Rroxscaffold_2G00090780 Rroxscaffold_2G00125020 Rroxscaffold_2G00125690 Rroxscaffold_3G00252090 Rroxscaffold_6G00393900
rosa_rugosa	Rorug03G0293900 Rorug03G0334700 Rorug03G0343100 Rorug04G0385500 Rorug05G0136700 Rorug06G0008200
rosa_samantha	Rh1BG396000 Rh1CG409000 Rh2CG325300 Rh4AG142900 Rh4AG276000 Rh5CG272500 Rh5CG276700 Rh6BG126600 Rh6DG111600
rosa_wichuraiana	Rw2G011210 Rw3G012340 Rw3G019470 Rw4G034300 Rw5G010750 Rw5G022370 Rw5G022390 Rw5G022420 Rw6G007260 Rw7G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	283
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	2 cut(s)	37, 234
AgsI	TTSAA	2 cut(s)	110, 202
AluBI	AGCT	5 cut(s)	49, 79, 154, 188, 230
AluI	AGCT	5 cut(s)	49, 79, 154, 188, 230
AlwNI	CAGNNNCTG	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	2 cut(s)	26, 325
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	53
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	336
BmsI	GCATC	2 cut(s)	16, 76
BsaHI	GRCGYC	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	176
BseGI	GGATG	1 cut(s)	7
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	112, 309
BspCNI	CTCAG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	336
BspMAI	CTGCAG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	2 cut(s)	112, 309
BssNI	GRCGYC	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	70, 155
BstF5I	GGATG	1 cut(s)	7
BstKTI	GATC	2 cut(s)	115, 312
BstMBI	GATC	2 cut(s)	112, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	52
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	36, 233
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviJI	RGCY	7 cut(s)	49, 79, 154, 188, 230, 275, 337
CviKI_1	RGCY	7 cut(s)	49, 79, 154, 188, 230, 275, 337
CviQI	GTAC	2 cut(s)	36, 233
DdeI	CTNAG	2 cut(s)	70, 155
DpnI	GATC	2 cut(s)	114, 311
DpnII	GATC	2 cut(s)	112, 309
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
FaiI	YATR	7 cut(s)	128, 135, 137, 139, 165, 342, 349
FaqI	GGGAC	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	56
HgaI	GACGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	301
HphI	GGTGA	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	55, 89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	2 cut(s)	70, 155
Hsp92I	GRCGYC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	112, 309
LmnI	GCTCC	2 cut(s)	211, 334
LpnPI	CCDG	4 cut(s)	89, 101, 189, 290
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	2 cut(s)	16, 76
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	114, 311
MboI	GATC	2 cut(s)	112, 309
MboII	GAAGA	2 cut(s)	122, 305
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	3 cut(s)	79, 246, 289
MseI	TTAA	3 cut(s)	42, 327, 352
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	2 cut(s)	112, 309
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	2 cut(s)	37, 234
RsaNI	GTAC	2 cut(s)	36, 233
SaqAI	TTAA	3 cut(s)	42, 327, 352
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	2 cut(s)	112, 309
SchI	GAGTC	1 cut(s)	310
SetI	ASST	8 cut(s)	51, 81, 104, 156, 190, 199, 232, 238
SfaNI	GCATC	2 cut(s)	16, 76
SfcI	CTRYAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	189
TasI	AATT	1 cut(s)	283
Tru1I	TTAA	3 cut(s)	42, 327, 352
Tru9I	TTAA	3 cut(s)	42, 327, 352
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	198
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.